Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03990 ATGGGTAAATCACCGGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAATCTTCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCAGAAACTGGTTTAGCTTTAGAGCCAACAGCCAATACTATTCCCAGATGCGAGGAAGACTTGGAGCTGGAGAACAAAGAAGCAGAAAATGTTTTGCCTGGGAATCAAGAAATTGACACAGTGGAACCTGTTAATCAAGATGCACCAATTGATCCAGAGACATTGAGGCTGGAGGAAGCAGCCACGAAAGCTCAGGCTGCTTTCAGGGGTTATTTGGCTCGGAGAGCTTTTAGGGCCCTAAAAGGCATAATAAGGTTACAAGCACTTATTCGCGGACACTTGGTTAGAAGACAAGCTGTTGTTACATTATGCTGTATGTATGGAATTGTCAAACTACAAGCACTTGGTCGTGGACAAAGTGTTAGAAAGTCTGATGTCGGATTTGAAATTCAAGAGAAGTGCATTCTATTGAAGTTTCAGGATGACAAACCTGGCAAACCAATTACACTATCTGGTAAAATTATGAAGCTGTCAGCAAATACTTTCATTCGTAAGCTTATTGCTTCATCAACTACAATAATGGCCCTGCGTTTGCAATATGTTCCTGGTGATCCAAATTCAGTCCTAAGTTGGTTGGAGCGTTGGTCAGCATCTTGGTTTTGGAAGCCAATTCCTCAACCCAAGAAAATTCGGGATACGAAGCCTCAGAAAAAGCAGGGTAATATTTCAACTGGAGATGCTCAAACAAGCAAGTCAAAACGTACCCACAGGAAACTTCCTACTGCAAATCTTGACCTAGCCCCATCACAAGCAAATCCTGAAATTGAAAAACCAAAACGAAATGTAAGGAAATATCCAAGCCAACCCTCGGATCCTGTGCTGGAAAATCCCCAGATTGAGCTTGAGAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGTTGTGGAGACTGCAATTCTGTCAGAAGTTGAATCTGAGACTCTAAAGCCGAATGTGGAAAAGGAAACGGTTGCCTCCAGTGTTGATGTTTCAGAACCTGCGGTCATTAGTTCTAATGGGAAGATTAAGAAGGAAGCAACACTAACCATTTCCAGGGAGCCAGATATCGGAATTACTCATGGAGATTTGATCACTAAGGAGGTGTTTGACACTCCAAGCAGTTATCAGGTGAATGCGGAATCAAAGCCCTTGACAGATATTACAAGCAAAGATAAAAACATTTCTGACGAAGAAGTGAAAAATGATCCCATAGATTCAGTAGAGACTATTGGCAAAGATGAAAATTCTAATTTAACAAATGGAGGGTTGAGTCACAAGGAAGATCAAACGGGCAGTGAAAATCAGAAACCAGCCCGAAAAGCCTCAATTGTAGCTAAGCAGGAACGTGCAGAGAATGGTTTGCATAATAGTCCGACAATACCAAGTTATATGGCTGCAACTGAATCTGCAAAGGCAAAATTGAGGGCTCAAGGATCCCCAAAAGTTGGACAAGATGGAAGTGAGAAAAACAACAATGCTCGGCGACAGTCTCTGCCATCTTCAACTAATAGCAAAATCAGTTCTCATTCACCTAAAATACAGAGACCAACTCAATCAGGTGGTAAGGCGGGCCACAAAAGTGACAAAGCTGTATCATCTTCTAGAGATGGAAATGCGAAGGTAATTCAAGCAGAATGGAAGAGGTGA 1755 0.4171 MGKSPGKWIKTVLFGKKSSKSNIPRGREKLVNQKEGVVASKVSETGLALEPTANTIPRCEEDLELENKEAENVLPGNQEIDTVEPVNQDAPIDPETLRLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALGRGQSVRKSDVGFEIQEKCILLKFQDDKPGKPITLSGKIMKLSANTFIRKLIASSTTIMALRLQYVPGDPNSVLSWLERWSASWFWKPIPQPKKIRDTKPQKKQGNISTGDAQTSKSKRTHRKLPTANLDLAPSQANPEIEKPKRNVRKYPSQPSDPVLENPQIELEKVKRNLRKVHNPVVETAILSEVESETLKPNVEKETVASSVDVSEPAVISSNGKIKKEATLTISREPDIGITHGDLITKEVFDTPSSYQVNAESKPLTDITSKDKNISDEEVKNDPIDSVETIGKDENSNLTNGGLSHKEDQTGSENQKPARKASIVAKQERAENGLHNSPTIPSYMAATESAKAKLRAQGSPKVGQDGSEKNNNARRQSLPSSTNSKISSHSPKIQRPTQSGGKAGHKSDKAVSSSRDGNAKVIQAEWKR 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03990 584 MobiDBLite consensus disorder prediction 519 557 - -
Trre16g03990 584 Gene3D - 95 146 - -
Trre16g03990 584 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Trre16g03990 584 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Trre16g03990 584 MobiDBLite consensus disorder prediction 446 464 - -
Trre16g03990 584 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Trre16g03990 584 PANTHER IQ-DOMAIN 5-RELATED 1 542 - -
Trre16g03990 584 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Trre16g03990 584 MobiDBLite consensus disorder prediction 248 316 - -
Trre16g03990 584 MobiDBLite consensus disorder prediction 412 584 - -
Trre16g03990 584 Pfam Protein of unknown function (DUF4005) 483 563 IPR025064 -
Trre16g03990 584 SMART iq_5 98 120 IPR000048 GO:0005515
Trre16g03990 584 SMART iq_5 121 142 IPR000048 GO:0005515
Trre16g03990 584 MobiDBLite consensus disorder prediction 421 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03990 Trre-Chr16 45106360 45110549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03990 1 584 IQD Protein Family AT1G74690 45.381 4.42e-132 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03990 - - gmx:100807118 844.343