Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03987 ATGGAGTGCTCTTCTGGGAGATCTGGTGATGGAGATAGTGGACCTAAGGAAGATAAGAGAAGTGAGCATAGTATTGGTGATGATCATAAAAAGGAGACTATTGTTGAGGAACCACCCATTGCTAATGCTGAAAGATCAATGGTGGAAGCAGAACCAATAGCATCCTCTACCAAAAATGATAAGGTTGTTGATGATCAACTTGAGACAACAAAAGCCCAAATGGGTGAAGTGAGGGAAGAAAATCAACGGTTAAAGATGTGTCTCAACAAAATAATGACCGAATACCGGGCACTAGAAATTCAATTTCAAAATATGGTTAAGCAAGAAACAAAAAAGAACAATGTTGATCAAAATGATAATAACCATGAAGAAATAATGGCAGAATCTGATCTTGTTTCCCTAAGCCTTGGAAGAGTTCCTAGTAACAATGTTCCAAAAAATGAAGACAAAGTTAACAAAGTCTCTAAACTAGCATTGAATAATGAAGATGAAGAATTTAAGGAAGAATTGGCTCTTGGATTGGATTGTAAATTTGAAACATCAAAATCAGGTAGCACTACTGAAGGATTACCAAATGTTCCAAGTCCTGTGAATAGTTCTGAAGTAATTCCAATAAAGGATGATGAAGTTGTGGAAACTTGGCCACCAAGTAATAAGGCTGTTAATAATAAGACAACTAGAGATGCTGAGGCTGAAGTTGCTCAACAAACTCCTGCCAAGAAAGCTAGAGTTTGTGTTAGAGCACGATGCGACACACCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCGAAAGGAAATCCATGCCCTCGAGCTTACTATCGTTGCACAGTTGCACCATCATGCCCGGTTAGAAAACAGGTACAAAGATGTGTTGAAGACATGTCAATTTTAATCACAACCTATGAAGGAACACACAACCATAACCTCCCTCTTTCAGCAACAGCTATGGCTTCCACGACATCCGCGGCCGCGTCCATGCTATTATCAGGTTCATCAACCTCTCATTCTGGTTCAATGCCCTCAACACAAACCAACAACAATCTTCATGGCCTAAATTTTTACCTACCAGATGGTTCAAAATCAAACCAACTTTACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACAATCACTCTTGACCTCACTTCAAACCCATCAAATTCTTCAACATCACCCTTTGTTAGATTTAATACAAACTACAACAACAATAACCAATTACCAAGATACCCTTCTTCCACAAGTCTTAGCTTTAGTTCCCCTGAATCAAACCCAATGCATTGGAATAGCTTCCTCAATTATGCTACTACACAAAATCAACAACAATATAGTAACATTAATAGAAACAATAATAACCTCAGCACATTAAACTTTGGTAGACAACAAAATACAATGGAAAATATATACCAATCATACATGCAAAAAAACAACAATGTTTTACCAGATAGTACTATATCTGCAGCAACAAAAGCAATCACTGCTGATCCAAATTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCACTTATTGGAAACAGTACTAATAATAATCAAGGGAATCAAAATAATCAAAGTGGAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCCTGTTTCTGCTAGCTCGTTGCCTTCAAGTTCTAAAGTTAATGGTTGTGCTTCAAGTTTCTTGAACAAGACGGCGCCGACAAATGCACAGACAGGAAGTTTGATGTTACTGTCTCCTTCTTTGCCATTTTCTACAACCAAAAGTGCTTCTACATCTCCCGGTGGTGGTGATAATAGTGACAACACCAATTAA 1836 0.3802 MECSSGRSGDGDSGPKEDKRSEHSIGDDHKKETIVEEPPIANAERSMVEAEPIASSTKNDKVVDDQLETTKAQMGEVREENQRLKMCLNKIMTEYRALEIQFQNMVKQETKKNNVDQNDNNHEEIMAESDLVSLSLGRVPSNNVPKNEDKVNKVSKLALNNEDEEFKEELALGLDCKFETSKSGSTTEGLPNVPSPVNSSEVIPIKDDEVVETWPPSNKAVNNKTTRDAEAEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHNLPLSATAMASTTSAAASMLLSGSSTSHSGSMPSTQTNNNLHGLNFYLPDGSKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSPFVRFNTNYNNNNQLPRYPSSTSLSFSSPESNPMHWNSFLNYATTQNQQQYSNINRNNNNLSTLNFGRQQNTMENIYQSYMQKNNNVLPDSTISAATKAITADPNFQSALAAALSSLIGNSTNNNQGNQNNQSGGENLSQKMKWAEMFPVSASSLPSSSKVNGCASSFLNKTAPTNAQTGSLMLLSPSLPFSTTKSASTSPGGGDNSDNTN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03987 611 Pfam WRKY DNA -binding domain 256 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03987 611 MobiDBLite consensus disorder prediction 592 611 - -
Trre16g03987 611 FunFam probable WRKY transcription factor 31 240 317 - -
Trre16g03987 611 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 34 530 IPR044810 GO:0003700
Trre16g03987 611 SUPERFAMILY WRKY DNA-binding domain 248 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03987 611 Gene3D WRKY domain 239 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre16g03987 611 MobiDBLite consensus disorder prediction 1 64 - -
Trre16g03987 611 MobiDBLite consensus disorder prediction 181 199 - -
Trre16g03987 611 ProSiteProfiles WRKY domain profile. 250 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre16g03987 611 MobiDBLite consensus disorder prediction 181 200 - -
Trre16g03987 611 MobiDBLite consensus disorder prediction 11 38 - -
Trre16g03987 611 SMART WRKY_cls 255 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03987 Trre-Chr16 45084552 45088920 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03987 74 519 WRKY Transcription Factor Family AT5G15130 42.431 2.04e-84 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre16g03987 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03987 - - pvu:PHAVU_003G192000g 610.142