Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03982 ATGGAAGCAAACAAACTTAGATTGTTCTTTTTTTATGTATTTTGTCTTGCTATATTCCCTACCTTGAAGGCTAATATAGTTCACTTCGATCCTTTCTGGCAAAGTCGATCGCATGAAGCCAAAAAAGCTGCACAAAAGGCTTACAAGTTACATCCTGAGAATGAAACTGCTAATTTTAATATGCACGTCCATAAGGCTTTTGAAGTTTCCCATGGCACAAGGAGGAGTTTATTAAAACACAAAAAACACAAGGGTCCATGCGAAGCAACAAATCCCATCGATAGTTGTTGGAGATGCGATCCAAATTGGGAAAAAAACCGCAAGAGGCTAGCAGATTGTGTTATTGGTTTTGGTCACGGCACAACAGGAGGCAAAGATGGCAGAATTTATGTTGTCACTGATCCATCTGACAATGACCTTGTCAACCCAAAACCGGGGACTTTGCGACATGCAGCCATTCAAAACGAGCCATTATGGATCATTTTTCAACATCATATGACTATTAAATTGAAGTCAGAGCTTCTACTGACGGATAATAAGACCATAGATGGACGCGGTGTAAACGTTCATATTAGTGAGGGTGCTCAAATAACGATGCAATATGTGAAAAACATTATTATTCACGGGTTACACGTCCATGATATCAAACCATGCAATGGTGGCCTCATCAGAGACTCGCTGAGTCACTTTGGACAACGTTCGAGGAGTGATGGTGATGGAATTTCAATGTTTGGAGTTTCTCATGTTTGGATAGATCATATTTCATTGTGGAATTGTGCTGATGGTTTGATTGATACCGTAGAGGGATCGACAGCTATTACAATTTCCAACTGCCATATGACACATCACAACGACGTTATGTTATTTGGAGCAAGTGATACGTTCGACGGAGATCAATTTTCGCAAATAACTGTGGCTTTCAACCATTTTGGGAAAGGATTGATACAGAGAATGCCAAGATGCAGATGGGGCTTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCGCACATCCCACCATACTTAGCCAGGGTAACCGGTTTATTGCTCCTCCGGACCGAAATGCAAAAGAGGTGACAAAGAGAGATTATGCACCTGAAAGTGTGTGGAAGAAATGGAGTTGGAGATCAGAGAATGATTTGCTGATGAATGGAGCCTTCTTTGTCCAGTCAGGAACTAAGGCAGCAAATTTTCCTAAGTCAGACATCAAACCAAAGCCTGGGAGTTTTGCTGCCGCTCTTACTCGTTATGCAGGTTTTCTAAAATGTGAAGTAAACAAGCCATGTTAA 1314 0.4102 MEANKLRLFFFYVFCLAIFPTLKANIVHFDPFWQSRSHEAKKAAQKAYKLHPENETANFNMHVHKAFEVSHGTRRSLLKHKKHKGPCEATNPIDSCWRCDPNWEKNRKRLADCVIGFGHGTTGGKDGRIYVVTDPSDNDLVNPKPGTLRHAAIQNEPLWIIFQHHMTIKLKSELLLTDNKTIDGRGVNVHISEGAQITMQYVKNIIIHGLHVHDIKPCNGGLIRDSLSHFGQRSRSDGDGISMFGVSHVWIDHISLWNCADGLIDTVEGSTAITISNCHMTHHNDVMLFGASDTFDGDQFSQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSAHPTILSQGNRFIAPPDRNAKEVTKRDYAPESVWKKWSWRSENDLLMNGAFFVQSGTKAANFPKSDIKPKPGSFAAALTRYAGFLKCEVNKPC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03982 437 Gene3D - 90 430 IPR012334 -
Trre16g03982 437 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Trre16g03982 437 Pfam Pectate lyase 171 356 IPR002022 -
Trre16g03982 437 SMART amb_all 165 362 IPR002022 -
Trre16g03982 437 SUPERFAMILY Pectin lyase-like 65 431 IPR011050 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 173 189 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 381 405 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 113 130 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 237 258 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 339 358 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 137 162 IPR018082 -
Trre16g03982 437 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Trre16g03982 437 PANTHER PECTATE LYASE 18-RELATED 40 435 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03982 Trre-Chr16 45015383 45017302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03982 8 437 Polysaccharide Lyase AT1G14420 56.152 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03982 K01728 - gmx:100801864 682.945