Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03970 ATGGCTGGTGGTAGAGTTTTTACAAATGGTCCTGCAAATAATAGTTCAAATATGAATATGTTGTTTCACAATCAACAACAACGTCTAAACAACACTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTTCTTCTTCTGTTCCGTTCTTCGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAGGGAAAAGGTGCAATAGGTCTTTCTTCACCGGATTTGACCTCGATGAAAATGGAGACGATGAGATGGATGAGTACTTTCATCAATCGGAGAAGAAGCGGCGTCTATCGGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAAGTTGAGAACAAGCTTGAACCAGATAGGAAAATCAAGATAGCCAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAGAACCGCCGTGCAAGGTGGAAGACCAAACAGCTTGAGAAAGATTATGAAACTCTTAATGATAGCTTTGAGTCTCTTAAGACTGATTATGACAACATCCTCAAGGAGAAAGAGAGATTACAAGCTGAGGTGGCAAGCCTAACTGAAAAGGTACTTGCAAAAGAGAAACAAGAGGGAAAATTGAAACATGGTGAAAGTGAAACAAAAGAATTACTGCAGAAACCACTAATGAATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCATGTAATAATAATAATAGCAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGACAGCCCACGTTACACGGATGGAGTGTTGGAGACATGTGATTCATCCTATGTATTTGAACATGAATATCAATCAGATCTATCACAAGATGAAGAAGACAATTTATTGCCTCCTTATAACATCTTTACAAAACTTGAAGATGTTAATTACTCCGACCCGCCACACGGTTCGTCTACTTTTGGATTTCAAGAGGAAGATCATCATACTCTTTGGCCATGGTCTAACTACTAG 999 0.3894 MAGGRVFTNGPANNSSNMNMLFHNQQQRLNNTSQQPLDSLFLSSSSSSVPFFGSRSMVSFEDVQGGKRCNRSFFTGFDLDENGDDEMDEYFHQSEKKRRLSVDQVQFLEKSFEVENKLEPDRKIKIAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYETLNDSFESLKTDYDNILKEKERLQAEVASLTEKVLAKEKQEGKLKHGESETKELLQKPLMNSVSEGEGSKLSIVEACNNNNSNKLEDISSARSDILDCDSPRYTDGVLETCDSSYVFEHEYQSDLSQDEEDNLLPPYNIFTKLEDVNYSDPPHGSSTFGFQEEDHHTLWPWSNY 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03970 332 FunFam Homeobox-leucine zipper protein HAT5 89 153 - -
Trre16g03970 332 SUPERFAMILY Homeodomain-like 83 153 IPR009057 -
Trre16g03970 332 CDD homeodomain 96 152 IPR001356 GO:0003677
Trre16g03970 332 PRINTS Lambda-repressor HTH signature 131 147 IPR000047 GO:0003677
Trre16g03970 332 PRINTS Lambda-repressor HTH signature 122 131 IPR000047 GO:0003677
Trre16g03970 332 SMART HOX_1 94 155 IPR001356 GO:0003677
Trre16g03970 332 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 72 236 IPR045224 GO:0003700
Trre16g03970 332 Coils Coil 150 198 - -
Trre16g03970 332 ProSitePatterns 'Homeobox' domain signature. 126 149 IPR017970 GO:0000981|GO:0006355
Trre16g03970 332 ProSiteProfiles 'Homeobox' domain profile. 91 151 IPR001356 GO:0003677
Trre16g03970 332 Gene3D - 79 156 - -
Trre16g03970 332 Pfam Homeobox associated leucine zipper 151 192 IPR003106 GO:0006355|GO:0043565
Trre16g03970 332 Pfam Homeodomain 96 149 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03970 Trre-Chr16 44929946 44931767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03970 40 273 Homeobox Transcription Factor Family AT3G01470 40.171 8.83e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre16g03970 Homeodomain 4.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03970 - - mtr:11437653 522.702