Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03958 ATGGGGAATTGCATCACGTGTATAAACTCAGAAGCAAACGAGTCAAACCGGAAACCAACAACCGAGTCGAACCGGGGAGGAAGAAAAGCAAGAAAAACAAAACCAAATCCATACACAGAACAATCGTTAACTTCAGGAGCAGCGATTAAAGTTCTAAAAGAATCAAATCAACGAAATCGAATCGGAGACAAATACGTGTTAGGTCGTGAGCTAGGTCGCGGTGAATTCGGCATAACGTATCTTTGTTCAGACAAAGAAACGAAGGAAGAATTAGCTTGTAAGTCAATTTCAAAGAGGAAATTAAGAACGGCGGTTGATGTTGAAGATGTACGCCGTGAAGCGGCGATTATGGCGACGTTACCGGAACATCCTAATGTGGTGAAGTTGAAAGCTACTTATGAAGATGATGAAAATGTTCATCTTGTTATGGAATTGTGTGAAGGGGGTGAACTTTTTGATAGGATTGTTGCGAGAGGACATTATAGTGAACGTGCTGCTGCTCATGTTGCAAGAACTATTGCTGAAGTTGTTAGAATGTGTCATTTTAATGGTGTTATGCATAGAGATCTTAAGCCTGAGAATTTTCTTTTTGCTAATAAGAAAGAAAATTCTCTTCTTAAAGCTATTGATTTTGGTCTCTCGGTTTTCTTCAAGCCTGGGGAGAGATTTTCGGAGATTGTGGGGAGTCCGTACTATATGGCACCGGAGGTTTTGAAGAGGAATTATGGTCCAGAGGTTGATATATGGAGTGCTGGGGTGATTTTGTATATTTTGTTATGTGGGGTGCCTCCGTTTTGGGCTGAGACCGAACAAGGTGTTGCTTTGGCAATTTTGAGGGGAGTAATTGACTTCAAGAGGGAGCCTTGGCCTCAAATTTCTGACAGTGCCAAGAGCCTTGTGCGTCAGATGTTGGAACCTGATCCTAAAAAACGCTTGACGGCAGAACAGGTGCTTGAACATCCTTGGCTACAAAATGCAAAGAAAGCTTCGAACGTACCACTAGGAGATATTGTGAGGACAAGGCTTAAGCAATTCTCCTTGATGAATAGATTCAAAAAGAGAGCTCTTCGGGTAATTGCAGAACATTTATCCCTTGAAGAAGTAGAAATAATCAAAGACATGTTTACATTGATGGATACTGACAAAGATGGCAGCATAACATATGAGGAACTGAAGGCTGGTTTGCGGAAAGTTGGTTCACAACTGGCTGAGCCAGAGATAAAGTTGTTGATGGACGTGGCCGATGTTGATGGGAATGGAGTGCTTGACTATGGAGAGTTTGTAGCTGTGACAATTCACTTGCAAAGAATGGAGAATGACGAGCATTTCCGCAAAGCATTCAAGTTTTTTGACATAGATGCGAGTGAGTATATTGAGTTAAGTGAACTAGAAGCAGCATTAGCAGATGACTTAGGAGAAACTGATTCTAATGTACTGAATGAAATCATGCGAGAAGTTGATACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACGGGAACTGATTGGAGAAAAGCATCCAGGCAATATTCTAGGGAAAGATTCAAGAGCCTGAGCATAAACTTGATGAAGGACGGCTCGCTTCAGCTTCATGACGGAATAAGTGGTCAAGCTGTTGTGGTTTGA 1644 0.4185 MGNCITCINSEANESNRKPTTESNRGGRKARKTKPNPYTEQSLTSGAAIKVLKESNQRNRIGDKYVLGRELGRGEFGITYLCSDKETKEELACKSISKRKLRTAVDVEDVRREAAIMATLPEHPNVVKLKATYEDDENVHLVMELCEGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHFNGVMHRDLKPENFLFANKKENSLLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSLMNRFKKRALRVIAEHLSLEEVEIIKDMFTLMDTDKDGSITYEELKAGLRKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFKFFDIDASEYIELSELEAALADDLGETDSNVLNEIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDGISGQAVVV 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03958 547 SUPERFAMILY Protein kinase-like (PK-like) 61 331 IPR011009 -
Trre16g03958 547 CDD EFh 442 504 IPR002048 GO:0005509
Trre16g03958 547 SMART serkin_6 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03958 547 Gene3D - 332 507 - -
Trre16g03958 547 Gene3D Transferase(Phosphotransferase) domain 1 151 331 - -
Trre16g03958 547 ProSiteProfiles EF-hand calcium-binding domain profile. 438 473 IPR002048 GO:0005509
Trre16g03958 547 ProSiteProfiles EF-hand calcium-binding domain profile. 474 509 IPR002048 GO:0005509
Trre16g03958 547 MobiDBLite consensus disorder prediction 21 35 - -
Trre16g03958 547 ProSitePatterns EF-hand calcium-binding domain. 379 391 IPR018247 -
Trre16g03958 547 SUPERFAMILY EF-hand 351 530 IPR011992 -
Trre16g03958 547 FunFam Calcium-dependent protein kinase 1 67 150 - -
Trre16g03958 547 Pfam EF-hand domain pair 371 430 IPR002048 GO:0005509
Trre16g03958 547 Pfam EF-hand domain pair 441 504 IPR002048 GO:0005509
Trre16g03958 547 ProSitePatterns EF-hand calcium-binding domain. 415 427 IPR018247 -
Trre16g03958 547 Gene3D Phosphorylase Kinase; domain 1 66 150 - -
Trre16g03958 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Trre16g03958 547 Pfam Protein kinase domain 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03958 547 ProSiteProfiles EF-hand calcium-binding domain profile. 366 401 IPR002048 GO:0005509
Trre16g03958 547 FunFam Calcium-dependent protein kinase 7 332 507 - -
Trre16g03958 547 MobiDBLite consensus disorder prediction 14 42 - -
Trre16g03958 547 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524
Trre16g03958 547 FunFam calcium-dependent protein kinase 13 151 331 - -
Trre16g03958 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 499 - -
Trre16g03958 547 ProSiteProfiles EF-hand calcium-binding domain profile. 402 437 IPR002048 GO:0005509
Trre16g03958 547 CDD STKc_CAMK 64 322 - -
Trre16g03958 547 SMART efh_1 370 398 IPR002048 GO:0005509
Trre16g03958 547 SMART efh_1 442 470 IPR002048 GO:0005509
Trre16g03958 547 SMART efh_1 478 506 IPR002048 GO:0005509
Trre16g03958 547 SMART efh_1 406 434 IPR002048 GO:0005509
Trre16g03958 547 ProSiteProfiles Protein kinase domain profile. 65 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03958 547 ProSitePatterns EF-hand calcium-binding domain. 487 499 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03958 Trre-Chr16 44746581 44750578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03958 1 547 EF-hand Containing Proteins AT1G74740 77.737 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trre16g03958 Pkinase 7e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03958 K13412 - gmx:100800559 924.08