Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03956 ATGGGACACAAAAAGCGAAACTCTGTTCCACGTTCCAAACTATCGCCGGCGGCTTCTCCGGTGGCTCAATCCCCCATCGGCGGAGCCGCCAATGGTTCCACTTCACCGGAAGCCGATTCCATCATTGTTTTCAATCAAAATCTCACCAACCCTAGCAAGATCGAATTAGTTTCTCATCAATCTGAGGGTTCCGATTTCTCTGCAATTAAGGTAGAATGTGAGCGAGCCCTAACCACGTTTCGTCGTGGGAATCATAATAGGGCAATGAAGCTTATGAAGGAGTTGTGCTTGAAAGAGGATGGTTCGCCTTACTCCGCTTTCGTTTATCGAATTCATGGGTTTATATGTTTCAAAGTGGCTTCGATTATTACTGATTGTAGTTCGAAACAGAGGCATTTGAAGCATGCTGTTGAATCCGCGCGGAGAGCTGTTGAGCTTTCGCCGAATTCGATTGAGTATGCACATTTTCATGCCACTGTGATGTTGGAAGCAGCCACTGAGGGGAAGGATTATGAGGATGTGGTGCACGAGTGTGAGAGAGGGCTTGCTATTGAAAACCCAAATGATCCTGCTAAGGAGACATTGCAGGATGAGAGCGAGCAGAAAGTGTCGAGTTTGGAAGATCGGATTTTACATGTGCAGGCTGAGTTGAGGCAGCTGATTCAGAAGTCAAACATAGCTTCATTGTCGTCTTGGATGAAAAATCTGAGTAATGGGGAAGAGAGGTTTCGGTTGATTCCTATAAGGAGGGCTACGGAGGACCCTATGGAGGTTAGGTTGGTTCAGACTAGAAGGCCAAATGAGATTAAGAAGGTGACCAAGACTCCCGAGGAAAGAAGAAAAGAGATCGAAGTAAGGGTAGCTGCTGCAAGGCTGTTGCAGCAGCAGTCGGAGTCACCCCAGTCCCCAAATGAAGGAGATAGGGATGACAGAGCATTGGATGTGTCTTCAGGGTCTAGTCAGAGGATAGGTGAGAGGCGAAGGCATGTGAGAAACAATGGCTCTTCAGCCGAAAGGAGAAAGTGGGTGCTAACTTATTGGGATTCACTGAGTATGGATGTGAAGAAGGACTGGCTTAGGATTAAAATATCTGATATCATGTCCCACTTTAGCTCTACAAAGGATACTTTACCGAAAGATGTTTTATCAGAAGCACTGTTTTATGCTGAAGCCAATAAAACATGGAAATTTTGGAATTGTGGCATTTGTGCTGAGAAATTTCCCAATCAGGAATTTCATAGGCAGCATGTTATGCATGTGCACCTTCAGACTCTCTCGCCAAAAATGCAGAGACTTTTGCCTCAACATGTCGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGACTATAAAGCAAAACTGAAAGGTCCATCACTTCCAGAGGATTATCTTACTCAGGACTACAACGATTGTTTTAAAGATTCAAGCAGCTCTTACCATGAAAAGGAAAGTTTAGGGTACAGTATTGGTAATTGTACGACCGAAAGCAGTAAGTATTATAAAAATGCTGAAAGTGATGCCAAAGAAGGCATTGAAGACCAACAGTTTATGGCAAATCCAGTTACTGATTGTTGGCCAGTATCTGATGACAAGGAGCGTGCAAAACTTCTAGAGAAAATCCATGGAGTATTTGAGATACTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTCACAAAGTCATACAATTTAGTATGGGTGAGATCCAGGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATGTAGACCAAACACCAATGTGTATATGCTTTCTGGGAGCTTCACAACTTAAGAAAATTCTCCAGTTTCTGCAGGAAATGTCTCATGCTTGTGGGCTGGGTAGATATTCTGATAAAAGTAGTAGTCCGAAGAATGATTTGCATGATATTAGTCAAGGTCCTGAAATTAAAGATAAAATTGTTCTTAATGGAGATGCATCATGCCTTCTCCTGGATGAGTGTCTACTGCCAACACAAGTCACTCCTGGTACAGTCCATGAGGTTGTCTTCGATGACATGGTCACCCCAAGTTCTCCTGATGGAATTTCAGACAATAGTGGTGCTTGGTTGTCCTGGCTATATTCAAGTCGGCCTATTGGGGATCAGTTGACGTCATGGATTCGGACCAAAGAAGATAAAACATGCCAAGGACAAGAAATGGTCCGGACACTTGACAAGGAGTTTTATCAATTACATAGCCTGTGTCAGAAGAAGTCTGACCGTATAAGTTATGAGGAAGCACTACAGACAATAGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAAATGTGGGTGAATTTGTGCAGCGAAGCTATGAGTCTGTCTTAAAAAGGCGGAGAGAAGAGCTTGCTGAGAGTGAGAATGAAATGATGTATGCTGGCAATAGATTTGAGATGGATTGTATATCAAATGTTTTGCAAGAAGCAGAAGCGATGAATGTTAATCAATTTGGCTATGAGGAAACTTATACTGGTGTGACTTCTCAGTTATGTGACTTGGAATCCGGTGAAGATGATGAATGGAGAATGAAGGACTGCTTGCACCAAATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTCGTCTATAGAGATTAGCAAAGTCGATGCTGAAATAATTAAATGTGTTTCAGAGGTGCAGCAATTGGAACTCAAGCTTGGGCACGTTTCTGCCAATGATTATCGAGCAATAATAGTGCCTCTGGTGAAGTCGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAAGATGCAAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTAGCAAAGGGGTAAATGAGAACACAAGACATGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGGAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCATCCCTTGCTTCAGTCTACAACTCTTGATTCTGATCTGGTATCACCTGATAGTGACTTTCAAGATCATGAGGTTGTTTCTATGAATGATGATGATTTGGAGCACCACGAAGAGGAATTTAGACGTAAAATTGAGCTTGAAGAGGAGGAGAAAAAGCTTGAAGAAACCTTGGAACTTCAACGGAGGATTGAAAATGAGGCCAAACAGAAGCACCTTGCTGAGCAACAGAAGAAATTATCTGGTACTTGTGTAGAGGAAGTAACAGATAAACTTCAAGATTGTCAATTGAAGCCTGTTGCTGATGGTTCAGATGCACAAGAACATGGAAGACTACCTATGCAGGAACAGTTGGCAAAGGAGAATGGGTGCCCAAATAATCTGGATGTTGTGCTTATTACCACATCAAATGGTTCCATGATGCCGACTAAATCTTCAGCTGATTCAGATTCCCAAAAAATTAATCATTTGCATCAGTCAAAAGTTAAACAAGATATACCCAATGGAATTGTTCCAGAGAATGGTCTACCTTTTCCTGATCGACGTGCAGGAAAAAAACATAAGCGGAATAAGAATTCGTCTAAAATGGTTGATGGAAAGTTGGAATATGGTTCATTGGAGAATGAGAATATTGAGGATACACACAATGACTATCACTTGAGAGAGCAGTCTAAGTTTCCTAACAATCAAGATGTTAAAAATGTGTTGGAAAACAATGGAGCAAAGGTGATGAAAGAATTGCCAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTTCGCCAAAGCCTAGACACGTATCAAGCACGTGGAAATTTGCCGTTGGCTTCAAGTATGAGAGTGCCACAGAGATCTTCCTCACAAGTAGACCGTTTAGGTATTGTATCTTTGGAAGACTCAACTCAGGATGTAAATGGAGCTAGTTTACTTGGTACGGGACTGAGGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATTCAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGCCAGATCAAGATCAGAGCATGATCATGTGGGCAATCCCTGTGTTGTCTGTGCCTTGTATGAAATATTTACTGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACATCCCTGCGGATAGCTCTAAGCAACCTATATCCACATAGTAACTTCTTCCAGGAGGCTCAGATGAATGACGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCGATCATTTACTCGTGGTGTTTCTGATGCAAAAACCGTGGAAAGCAAGTGCATGGGGTCTTGGGATTGTGCAGCTGGTAGTTGTATAGCACATTCACTTTTTGGAATGGACATTTTTGAACAAATGAACTGCTACCATTGTGGTCTCGAGTCCAGACATTTGAAGTATACTTCCTTCTTTCACAATATAAACGCCAATGCCCTAAGGACAATGAAGGCTATGTTTCCCGAAAGCTCCCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCAATTGGCTTGTGATCTAGAAGCTGGTGGCTGTGGCAAGCTCAACCACATCCATCACTTTCTTTCAACCCCACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTGATGATATAACTGCAACTCTGGCAGCTCTGAGCACCAAGATAAATATCAGTGTCCTTTATCGTGGTTTAGATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTTTGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGTCATGACCATGGCCAATGGATTATGTATGATGACAAGACTGTTAAGATAATTGGTGGATGGGCTGATGTTCTGACTATGTGTGAGAGAGGGCATCTACAGCCTCAGGTTCTCTTCTTTGAAGCTGTAAACTAG 4932 0.4213 MGHKKRNSVPRSKLSPAASPVAQSPIGGAANGSTSPEADSIIVFNQNLTNPSKIELVSHQSEGSDFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEDGSPYSAFVYRIHGFICFKVASIITDCSSKQRHLKHAVESARRAVELSPNSIEYAHFHATVMLEAATEGKDYEDVVHECERGLAIENPNDPAKETLQDESEQKVSSLEDRILHVQAELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQQSESPQSPNEGDRDDRALDVSSGSSQRIGERRRHVRNNGSSAERRKWVLTYWDSLSMDVKKDWLRIKISDIMSHFSSTKDTLPKDVLSEALFYAEANKTWKFWNCGICAEKFPNQEFHRQHVMHVHLQTLSPKMQRLLPQHVDNEWIEMILNCSWKPLDVSAAVKMLDYKAKLKGPSLPEDYLTQDYNDCFKDSSSSYHEKESLGYSIGNCTTESSKYYKNAESDAKEGIEDQQFMANPVTDCWPVSDDKERAKLLEKIHGVFEILIRHKCLAASHLHKVIQFSMGEIQGLAAGSELLKHDVDQTPMCICFLGASQLKKILQFLQEMSHACGLGRYSDKSSSPKNDLHDISQGPEIKDKIVLNGDASCLLLDECLLPTQVTPGTVHEVVFDDMVTPSSPDGISDNSGAWLSWLYSSRPIGDQLTSWIRTKEDKTCQGQEMVRTLDKEFYQLHSLCQKKSDRISYEEALQTIEDLCLEEGKKRENVGEFVQRSYESVLKRRREELAESENEMMYAGNRFEMDCISNVLQEAEAMNVNQFGYEETYTGVTSQLCDLESGEDDEWRMKDCLHQMDGCIEIAIQKLKEHSSIEISKVDAEIIKCVSEVQQLELKLGHVSANDYRAIIVPLVKSYLKTLLEDLAEKDAREKSDAAGEAFLAELALDSKKISKGVNENTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLLQSTTLDSDLVSPDSDFQDHEVVSMNDDDLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCVEEVTDKLQDCQLKPVADGSDAQEHGRLPMQEQLAKENGCPNNLDVVLITTSNGSMMPTKSSADSDSQKINHLHQSKVKQDIPNGIVPENGLPFPDRRAGKKHKRNKNSSKMVDGKLEYGSLENENIEDTHNDYHLREQSKFPNNQDVKNVLENNGAKVMKELPVEDEEEERFQADLKMAVRQSLDTYQARGNLPLASSMRVPQRSSSQVDRLGIVSLEDSTQDVNGASLLGTGLRNEVGEYNCFLNVIIQSLWHLRRFRVEFLARSRSEHDHVGNPCVVCALYEIFTALDLASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTRGVSDAKTVESKCMGSWDCAAGSCIAHSLFGMDIFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKAMFPESSLDKLLNLVERNHQLACDLEAGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTKINISVLYRGLDPKSTHNLVSVVCYYGQHYHCFAYSHDHGQWIMYDDKTVKIIGGWADVLTMCERGHLQPQVLFFEAVN 1643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03956 1643 MobiDBLite consensus disorder prediction 292 334 - -
Trre16g03956 1643 SUPERFAMILY Cysteine proteinases 1312 1640 IPR038765 -
Trre16g03956 1643 MobiDBLite consensus disorder prediction 303 334 - -
Trre16g03956 1643 Coils Coil 785 805 - -
Trre16g03956 1643 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1642 - -
Trre16g03956 1643 MobiDBLite consensus disorder prediction 1161 1188 - -
Trre16g03956 1643 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1312 1642 IPR028889 -
Trre16g03956 1643 Pfam Protein of unknown function (DUF627) 75 186 IPR006866 -
Trre16g03956 1643 Pfam Ubiquitin carboxyl-terminal hydrolase 1313 1618 IPR001394 GO:0004843|GO:0016579
Trre16g03956 1643 Gene3D Cysteine proteinases 1298 1641 - -
Trre16g03956 1643 CDD Peptidase_C19 1403 1640 - -
Trre16g03956 1643 MobiDBLite consensus disorder prediction 964 1015 - -
Trre16g03956 1643 Coils Coil 1032 1072 - -
Trre16g03956 1643 Gene3D Tetratricopeptide repeat domain 65 209 IPR011990 GO:0005515
Trre16g03956 1643 Coils Coil 196 223 - -
Trre16g03956 1643 MobiDBLite consensus disorder prediction 995 1011 - -
Trre16g03956 1643 Pfam Protein of unknown function (DUF629) 345 871 IPR006865 -
Trre16g03956 1643 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
Trre16g03956 1643 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03956 Trre-Chr16 44693199 44702465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03956 65 1640 C2H2 Transcription Factor Family AT3G47890 54.000 0.0 1627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03956 - - gmx:100799759 2433.68