Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03955 ATGGACTCTATTATCATTCAAGCTAATTATAGAGATAAATATCCTGTGCATGGATGTTGGGAGGAAATTTGCAGGCTACAATATCAAATATGGATGATGGAAGAAGAACTTCATGTTGTTTATCAACAGCTTGCAATTTGCAGGCAACAACAACAACAGTTACCTCATGATGATGTGACTTCACAGTTAGAATTGGGAATGGCGCCGCGTTCGTCTAACGCGCTCGCACTCTTTAATCAAACTCCACAACCACAGAGTTATAATATTAACAACAATAATACAGTGGCTGCTCCTTTGTCTGTATCTCAGCAACATTCTTACTCCAACAGCAATAGTGTGGATTATAATAACTCACCCCTTTACATGGATTCAAAGGATAATGCTACAAATCCTAATTTGTGGATTCAGTGCCCTTACACAAGTAATAATAGCAATTCAATAACAATGCAACCTCATCAGTTGATTGCCTCAGAGTCGCAACCACTGTCATCTGTCCAACAAGGAGTTGTTGAAGATAATTATGATGAAATGCATTCATTTTTCGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCGGAAGAATCACTGAAAGATACAAGAAAGTGCACAGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCTTGTTTCAGCCTTACCAGTGTCAATTGA 702 0.3818 MDSIIIQANYRDKYPVHGCWEEICRLQYQIWMMEEELHVVYQQLAICRQQQQQLPHDDVTSQLELGMAPRSSNALALFNQTPQPQSYNINNNNTVAAPLSVSQQHSYSNSNSVDYNNSPLYMDSKDNATNPNLWIQCPYTSNNSNSITMQPHQLIASESQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN 233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03955 Trre-Chr16 44684831 44685855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03955 1 196 AS2 family AT3G47870 30.252 3.87e-14 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g03955 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03955 - - lja:Lj4g3v1600420.1 308.531