Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03954 ATGGGAGGCGGAGATCCTTCCTTATCGGATATGGAGGAAGAGGAGGAGGAAAACGATGTGAAGGTGAACGATTCAGTTGACATTCTCTCAACATTTCCACTCCTTGATGCTCCTATACTTTTGTTCGTTTGTTTTCATAAAGCTCTCCGTTCTGAACTCGATCAGCTTCGTTTATTCACTGAAACGGCGTCGTTAGAAGATGATCCAAACCGTTGCCGTGAATTAGTTGTTAAGCTTCAACAACGATTTCAGTTTCTGAAAATAGCTCTTAAGTATCATTGTGCTGCGGAAGACGAGATTATCTTCCATGCACTGGATACACATGTAAAAAATGTTGTAAGTACATATTCCCTTGAACACGACAGCACCAATGGGATGTTTGATTCTATTTTACACTTCTTGGATGAGCTAATGGGCCCTAGTGAGAATATTTCCAAGCTGTTCCGAGAACTTGTATACTGCATTGATATCTTGCAAACCTCCATCTACCAGCATATGCTGAAAGAAGAAGAACAGGTTTTTCCTCTGTTGATCCAAAAATTGTCTACTAAAGAACAAGCCTCACTTGTGTGGCAGTTCATATGTAGTGTTCCTATAATGTTGCTGGAAGAAATTTTGCCATGGATGGTATCTTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCAGTGTTTTAATGAAATTGCACCTATGGAAAGAGCACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTCCACTGAGACATATTTTCAGAGTGAAGAAATTCAAGGCTCTCATGGATTCCTACATATAGAGAGATCATTTGGGCCGAGTTCGTGCAATGAGAACTCCAAAGAAATTTCAAGTAAGAGGAAAGTGAATGGCAAAGAAACAGAAGATGGGATGAACCAAGTTAAAGTTCTTCATCTTTGGCATAATGCCATCAAGAAAGATTTGAAAGAAATTCAGCAAGAACTTTATCTAATGAGAAGTTCCAGCTGTTTTCAAAATTTAGACTCAATACTTATCCAACTAAATTTTTTGGCCGATGTCCTCGTCTTTTACAACAATGCTTTGAAGAAATTCTTCCATCCTGTACTGAACAAACTTTACCATGACCGGTTTTCCAAGTCTACTGAACATTTTCTAGGTCAAAGTCACATTGAAGATATACAACAGTTGCTATTCTATAATTCAGAAAGTGGAATGCCTTTGACCAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAATCATTTGTATCAGCAGTCAACAGACAATTTTCACTTCAAGAAATCGAGGTGTTTCCTATCTTTAGAAAGAACTGCATAAATGGAACACAAGTGAGGCTTCTAAGCTTGAGCTTGCATATGATGCCACTTGGGTTACTAAAATGTGTTATCACTTGGTTCTCAGTTCACTTGTCTGAACAAGAATCCAGGTCCATTCTCTATTGCATAAAGGAAGGAAATAATTCTGTCAGTAAAGCTTTTGCACCATTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCCATCGAAAAATTCCGACAGGACCTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCTGAGAAAATGAAGGAAGTTTGTGAGGATTCATTCTTAAATTCCGACAAGCAGCCACATAAAAGTTGCGGAAAGAATTGTTTGTCCTATTCATCATCTTCTGGATCCAAAAATGTGAACAAGTATGAGACACCATACTCCACAGGAATTAATCTGCACATATTTTTCCCTGCCACTGCTATGAAGTTTCAGCATCCAAGATTTCATGCAGAAAATCCTTCTTCTGTTTCTTTTCTTAATGATCCAAAACCAATTGACCTGATCTTCTTCTTTCACAAAGCTATTAAGAAAGATCTGGATTACCTAGTTCTTGGCTCAGCTCAGTTAGAGGAACATGGTGAGTTGGTTACAGATTTCCGCAAACGATTCCATCTCATATGTTTTCTGCATCAAATCCATAGTGATGCAGAAGACGAGATAGTTTTTCCAGCCTTGGAGGCAATAGGTCAAGGCAAAAACATTAGCCTTGCCTACACCTTTGATCACAAACATGAAGTTGAGCACTTCGGTAAAATATCTCGCATTCTTGATAAGATGGCTAAATTAGATCTTTCAGTTTCTACTACTGATTCAAAGATAAGGGACAAGAGACTGATAAGGCATCGTGATTTAATCAGGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGCGAGGAAATAGAAATTTGGCCAATAATTAGAGAGTTCTTCTCGAACCGGGAGCAAGGGAAGATTGTAGGATGCATGCTTGGAAGAATAAGAGCAGAAATATTACAAGATATGATACCTTGGTTAATGTCATCTTTAACACAGGAAGAGCAACATGTTTTAATGTTCTTATGGTCCATGGTTACTAAGAATACAATGTTTGATGAATGGTTAAGTGATTGGTGGAATGGGTACAGCTTAGCTAAGGCAGAAGATGGTTCAAATGATGCTCCTCTAGAGAATGCTGAGCCACTGGAAATTATATCTAAATATTTGTCTGAAGAAGTTCTCAATGAGTTGCAAGCAGAATCATCTGCAACTGAAAGATTAAATTTGTTGCAGAAGGATCATACTGGCAATAATTTTGAGCTGTCCAACCACAACGTTGATGACAGTGTTAAGGTTAATTATGCAGAACAAAATTATAGTCAATGTTCAAAATGCAAAAATCAATTTCATGATATTAAAAAGCATGCCTGCAATGAAGTAACAAATACCACAAATCCGATATACCATGAAAGTCGGTCGATTCAATATTTTGACAAGTCTGGGCATTATGACCGACTTCTGAAATTGAGTCAGGATGATCTGGAGAAGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGATCCTCAGAAAAAGTCATACATAATACAGAGCCTACTAATGAGCCGTCGGATTATTAGACAGCAGATCTCTTCTATGGAGGTCAATATCAAAGGAGATGGACAGGAATTCCCTGGGAAACATCCATCTTACAGGGACCCTCTCAAACAAATCTATGGTTGCAAACACTACAAGAGAAACTGTAAGCTTTTTGCCCCCTGTTGCAGCAACCAACTTCATGCTTGCATACATTGCCATGATGAGGTATCGGATCATTCAATTGACAGAAAATCTATTACAAAGATGATGTGTATGAAGTGCTTGGTGATTCAACCAGTCAATGCTACATGCTCGTCAGTTTCTTGCTGTAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAATTATTTGATGATGAAAGGGAAATTTACCACTGTCCCTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTCGATTTTTTTCATTGTATGAGTTGCAATGCTTGTATGTCTCGTTCTCTTATGACACATATATGCAGGGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATATTCACATCCTGCTCTCCAGTAAAAGCCCTCCCGTGCGGTCATGTGATGCACTCAACATGTTTTCAGGAATATACTTGCTTTAACTATACCTGCCCAATATGTAGCAAATCACTTGGAGACATGCAGGTCTATTTTAGGATGTTAGATGCACTATTGGCAGAGGAGAAAATGTCCGACGAGTTTTTGGGTCAAACTCAGGTTATATTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCATAAATGCCCTTGTTGTGGTTCCTACAACACTAGAGTTCTATGA 3807 0.3851 MGGGDPSLSDMEEEEEENDVKVNDSVDILSTFPLLDAPILLFVCFHKALRSELDQLRLFTETASLEDDPNRCRELVVKLQQRFQFLKIALKYHCAAEDEIIFHALDTHVKNVVSTYSLEHDSTNGMFDSILHFLDELMGPSENISKLFRELVYCIDILQTSIYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEILPWMVSFLSADKQAEVTQCFNEIAPMERALQEVLVSWLGSNKQTSTETYFQSEEIQGSHGFLHIERSFGPSSCNENSKEISSKRKVNGKETEDGMNQVKVLHLWHNAIKKDLKEIQQELYLMRSSSCFQNLDSILIQLNFLADVLVFYNNALKKFFHPVLNKLYHDRFSKSTEHFLGQSHIEDIQQLLFYNSESGMPLTKFVEKLCGKLESFVSAVNRQFSLQEIEVFPIFRKNCINGTQVRLLSLSLHMMPLGLLKCVITWFSVHLSEQESRSILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRHSFSSEKMKEVCEDSFLNSDKQPHKSCGKNCLSYSSSSGSKNVNKYETPYSTGINLHIFFPATAMKFQHPRFHAENPSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVLGSAQLEEHGELVTDFRKRFHLICFLHQIHSDAEDEIVFPALEAIGQGKNISLAYTFDHKHEVEHFGKISRILDKMAKLDLSVSTTDSKIRDKRLIRHRDLIRKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIVGCMLGRIRAEILQDMIPWLMSSLTQEEQHVLMFLWSMVTKNTMFDEWLSDWWNGYSLAKAEDGSNDAPLENAEPLEIISKYLSEEVLNELQAESSATERLNLLQKDHTGNNFELSNHNVDDSVKVNYAEQNYSQCSKCKNQFHDIKKHACNEVTNTTNPIYHESRSIQYFDKSGHYDRLLKLSQDDLEKVIRRVSRDSCLDPQKKSYIIQSLLMSRRIIRQQISSMEVNIKGDGQEFPGKHPSYRDPLKQIYGCKHYKRNCKLFAPCCSNQLHACIHCHDEVSDHSIDRKSITKMMCMKCLVIQPVNATCSSVSCCNLSMAKYYCRICKLFDDEREIYHCPYCNLCRVGKGLGVDFFHCMSCNACMSRSLMTHICREKSLEENCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGDMQVYFRMLDALLAEEKMSDEFLGQTQVILCNDCEKKGAAPFHWLYHKCPCCGSYNTRVL 1268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03954 1268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1155 1206 IPR013083 -
Trre16g03954 1268 Pfam CHY zinc finger 1032 1108 IPR008913 GO:0008270
Trre16g03954 1268 Pfam Zinc-ribbon 1209 1266 IPR039512 -
Trre16g03954 1268 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 660 1268 - -
Trre16g03954 1268 MobiDBLite consensus disorder prediction 1 20 - -
Trre16g03954 1268 SUPERFAMILY RING/U-box 1154 1208 - -
Trre16g03954 1268 CDD Hr-like 45 175 - -
Trre16g03954 1268 SMART ring_2 1162 1203 IPR001841 -
Trre16g03954 1268 CDD RING-H2_Pirh2-like 1161 1204 - -
Trre16g03954 1268 ProSiteProfiles Zinc finger RING-type profile. 1162 1204 IPR001841 -
Trre16g03954 1268 MobiDBLite consensus disorder prediction 274 296 - -
Trre16g03954 1268 Pfam Hemerythrin HHE cation binding domain 46 177 IPR012312 -
Trre16g03954 1268 Gene3D nmb1532 protein domain like 38 195 - -
Trre16g03954 1268 Gene3D nmb1532 protein domain like 611 783 - -
Trre16g03954 1268 CDD Hr-like 617 763 - -
Trre16g03954 1268 SUPERFAMILY Zinc hairpin stack 1099 1154 IPR037275 -
Trre16g03954 1268 FunFam Zinc finger protein-related isoform 1 1157 1206 - -
Trre16g03954 1268 ProSiteProfiles Zinc finger CTCHY-type profile. 1098 1161 IPR017921 -
Trre16g03954 1268 SUPERFAMILY CHY zinc finger-like 1023 1090 IPR037274 GO:0008270
Trre16g03954 1268 Gene3D - 1233 1268 - -
Trre16g03954 1268 ProSiteProfiles Zinc finger CHY-type profile. 1025 1095 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03954 Trre-Chr16 44673877 44683454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03954 604 834 C2H2 Transcription Factor Family AT3G18290 26.695 8.46e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03954 K16276 - gmx:100802706 2021.51