Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03946 ATGGCTTATAGACGTTGCCTCTTGCAAAGAGGAAACAACCTCATAGATCGGAGATACCATCCTTCTTTCACCTATATTCTCCATTCCGACGAAACGAAACGCGACCGTTCAGATGAGAAGAAATCATCGTCTTCCCAAGGAATCACTAACAACACTTTTATCCAATCAAGGTCCTTTCGAACCTCTTTTAATGGATCAATGGCTTTTTCTCCGTTCGCTGGATATAGTTTCTGCCGAAATATGTCGACACTGAATCGGGATGATTCAGATAAGATTAGCGTAATGAGTGATGTAGCTGATGTTCTCACTGATACTTCCATGGATGCTGGTATTCTCACTGAGACTGTTGTGGATGCTGCTGCTGTATCTTCTCAGGCTCCTGTTGTTAGTGAAGTTGTCATTGCTGCTGCTGATTCTTATTTGCCTGTACAAGCTTTGCAGTATGCCATTGATGCTGTTCATTCCTTCACTGGGTTAAACTGGTGGGCGGCCATAGTTCTAACAACTCTCTTGATTCGAACCGCAACTGTTCCACTTTTAATAAATCAACTCAAGGCCACTTCTAAGCTTACGCTTATGAGGCCTCGTTTGGAAGAGATAAAGGAAGAGATGGATGGGAAGACATTTGATCCCGAGGCTGTTGCTGAAGGTCAGAAGCGGATGAAACAGCTATTCAAAGAATATGGTGCGAGTCCTTTAACGCCATTGAAGGGACTCTTTATTCAAGGTCCTGTCTTCATTAGTTTTTTTCTTGCGATATCTAACATGGCTGAAAAAATGCCATCATTCAAGCATGGTGGAGCTTTTTGGTTTACTGATCTCTCAACTCCAGATGCCTTATACATTTTTCCAGTTTTGACTGCATTGTCATTTTTAATAGTAGTAGAGTGTAATGTGCAAGAAGGAATGGAAGGAAATCCTATGGGTGATACCATGAAAAAATTCTCGAGGATTCTTGCTTTTGTTTCAGTTCCTCTCACCATGGGTTTTCCAAAGGCAATATTTTGTTACTGGATTACATCAAATTTGTTTTCTCTAGCATATGGAACGGTGCTTAAAGTTCCTGGTGTAAAGAAAACTTTCGGTATTCCTGAATTACCAGCAGCACCCACCAGTTCTCCACAATCTCCCTTCTCTATTTTTCCAGCACTAAAACAAACTGCATCAGCTGCAGATGATCAAAGTTCATCGCCAGTTGAATCATCAAAACGACCAAATAAAAAGACATCTTCTTCTGCTATTATTAGTCAAAGGCTAAGAAGCTTAGAGAAACAAGTAAAAGGAAGAAAGAAAAACAAGAAAATTGACTAG 1311 0.405 MAYRRCLLQRGNNLIDRRYHPSFTYILHSDETKRDRSDEKKSSSSQGITNNTFIQSRSFRTSFNGSMAFSPFAGYSFCRNMSTLNRDDSDKISVMSDVADVLTDTSMDAGILTETVVDAAAVSSQAPVVSEVVIAAADSYLPVQALQYAIDAVHSFTGLNWWAAIVLTTLLIRTATVPLLINQLKATSKLTLMRPRLEEIKEEMDGKTFDPEAVAEGQKRMKQLFKEYGASPLTPLKGLFIQGPVFISFFLAISNMAEKMPSFKHGGAFWFTDLSTPDALYIFPVLTALSFLIVVECNVQEGMEGNPMGDTMKKFSRILAFVSVPLTMGFPKAIFCYWITSNLFSLAYGTVLKVPGVKKTFGIPELPAAPTSSPQSPFSIFPALKQTASAADDQSSSPVESSKRPNKKTSSSAIISQRLRSLEKQVKGRKKNKKID 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03946 436 MobiDBLite consensus disorder prediction 386 419 - -
Trre16g03946 436 CDD 5TM_Oxa1-like 158 355 - -
Trre16g03946 436 PANTHER OXA1 118 421 IPR001708 GO:0016020|GO:0032977
Trre16g03946 436 Pfam 60Kd inner membrane protein 161 348 IPR028055 -
Trre16g03946 436 MobiDBLite consensus disorder prediction 386 436 - -
Trre16g03946 436 NCBIfam membrane protein insertase YidC 160 347 IPR028055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03946 Trre-Chr16 44561405 44567881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03946 50 435 Chloroplast and Mitochondria Gene Families AT2G28800 23.367 4.21e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03946 K03217 - gmx:100817052 596.66