Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03944 ATGGATGCTAAGGATATCCTTGGTTTACACAAAAACTCATTCCCATCTTCTCTTGAAAAAAAATCTCGACCTCCCAAAGAATCTCACAGAAAACCCGATGGCATTTCACGCGAGGTTTATGCTCTTACTGGTGGAATGCCACCTCTTATGCCTTCCATTCATTCATCTCAATTGAAGAAAAAACCTCCTTCTCACGAAAAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTACCATTGGGTTCGAGTAGTCAATGGTGTACTACCTACTGGGGACTACTCTTTTGCCAAGTATAACAAGGTGTCTGTTGACATTATTAAATACACAGACGAGGAGTACGAAAAGTATTTGGCAGATCATATGTGGACCAAAGAGGAAACAAATGAACTATTCGACTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTGATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGTGTTGCGGGCTATATTACTTGCTAGGGCCGCATCTTCTGGGGACGTTGCAACACATCCTCTCATTAAGGATCCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCTCAAATGAGACACCAAGAGAAAAGAGATGAAGAGGTTCTTATCGAAGCAAAAAGAATAGCTGAGTTACGGATGGCTTCTAAGGTTACTGAACAGTCTCAGGTTGTTGCTTCAAATGCTGATGCAGAAGTTACAGAGAGGGCTGTCCCTGGTGAAACTATATCTCCATCGAACGTACAACTTACACCAATGGCTGTGCCATCCTCATTTACAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGCTTCGCGTATATTTGAGAACATACGCACTTGACCAAATGGTGCAAGCATCAAACTCATCTGCTGGAGTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCTACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACATGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTCCGTGATGGGTCGTACGGTGAACCACCGGGAACACCAAAGGTCAGAAGTTCACATTTCTTTCTGTTGGGTATTTTCCCCTCTATTGTTTTAGGCTTGTGTTGGAAACTATTGACACGTGTGCTTTGTGGTGGGTATCATGATCGGACATTTATTCCCGACTCGATCAATTTTGGAGTTTCAGGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGCGCATGGAACTCCACCTACAGCGGCTCATAAAAGACCTAGAAAACAAAAGGCCTCAGATCTTTGA 1410 0.4298 MDAKDILGLHKNSFPSSLEKKSRPPKESHRKPDGISREVYALTGGMPPLMPSIHSSQLKKKPPSHEKVTWQWLPFTNSARKDDLHLYHWVRVVNGVLPTGDYSFAKYNKVSVDIIKYTDEEYEKYLADHMWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVLRAILLARAASSGDVATHPLIKDPYNVSQEMERKRALSMVLSQMRHQEKRDEEVLIEAKRIAELRMASKVTEQSQVVASNADAEVTERAVPGETISPSNVQLTPMAVPSSFTDNASTLASLRMLRVYLRTYALDQMVQASNSSAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGEPPGTPKVRSSHFFLLGIFPSIVLGLCWKLLTRVLCGGYHDRTFIPDSINFGVSGERVGKKDQKRKAHGTPPTAAHKRPRKQKASDL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03944 469 SMART sant 127 176 IPR001005 -
Trre16g03944 469 MobiDBLite consensus disorder prediction 16 34 - -
Trre16g03944 469 FunFam DNA methyltransferase 1-associated protein 1 98 186 - -
Trre16g03944 469 Pfam SANT/Myb-like domain of DAMP1 102 177 IPR032563 -
Trre16g03944 469 CDD SANT_DMAP1_like 131 173 - -
Trre16g03944 469 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 459 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trre16g03944 469 MobiDBLite consensus disorder prediction 1 34 - -
Trre16g03944 469 MobiDBLite consensus disorder prediction 438 469 - -
Trre16g03944 469 Gene3D - 99 187 - -
Trre16g03944 469 SUPERFAMILY Homeodomain-like 128 178 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03944 Trre-Chr16 44536398 44541326 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03944 SANT_DAMP1_like 4.1e-28 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03944 K11324 - gmx:100818926 696.812