Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03943 ATGGATGCTAAGGATATCCTTGGTTTACACAAAAACTCATTCCCATCTTCTCTTGAAAAAAAATCTCGACCTCCCAAAGAATCTCACAGAAAACCCGATGGCATTTCACGCGAGGTTTATGCTCTTACTGGTGGAATGCCACCTCTTATGCCTTCCATTCATTCATCTCAATTGAAGAAAAAACCTCCTTCTCACGAAAAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTACCATTGGGTTCGAGTAGTCAATGGTGTACTACCTACTGGGGACTACTCTTTTGCCAAGTATAACAAGTCTGTTGACATTATTAAATACACAGACGAGGAGTACGAAAAGTATTTGGCAGATCATATGTGGACCAAAGAGGAAACAAATGAACTATTCGACTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTGATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGTGTTGCGGGCTATATTACTTGCTAGGGCCGCATCTTCTGGGGACGTTGCAACACATCCTCTCATTAAGGATCCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCTCAAATGAGACACCAAGAGAAAAGAGATGAAGAGGTTCTTATCGAAGCAAAAAGAATAGCTGAGTTACGGATGGCTTCTAAGGTTACTGAACAGTCTCAGGTTGTTGCTTCAAATGCTGATGCAGAAGTTACAGAGAGGGCTGTCCCTGGTGAAACTATATCTCCATCGAACGTACAACTTACACCAATGGCTGTGCCATCCTCATTTACAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGCTTCGCGTATATTTGAGAACATACGCACTTGACCAAATGGTGCAAGCATCAAACTCATCTGCTGGAGTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTTGGGGTCAATTTGAAACCAAGGGTTCCTACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACATGGCTGAATCTCCAGAAACAGGTGCAATATAAAGAGGCTGAAGGTTCATCTTTCCGTGATGGGTCGTACGGTGAACCACCGGGAACACCAAAGGTCAGAAGTTCACATTTCTTTCTGTTGGGTATTTTCCCCTCTATTGTTTTAGGCTTGTGTTGGAAACTATTGACACGTGTGCTTTGTGGTGGGTATCATGATCGGACATTTATTCCCGACTCGATCAATTTTGGAGTTTCAGGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGCGCATGGAACTCCACCTACAGCGGCTCATAAAAGACCTAGAAAACAAAAGGCCTCAGATCTTTGA 1407 0.4293 MDAKDILGLHKNSFPSSLEKKSRPPKESHRKPDGISREVYALTGGMPPLMPSIHSSQLKKKPPSHEKVTWQWLPFTNSARKDDLHLYHWVRVVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLADHMWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVLRAILLARAASSGDVATHPLIKDPYNVSQEMERKRALSMVLSQMRHQEKRDEEVLIEAKRIAELRMASKVTEQSQVVASNADAEVTERAVPGETISPSNVQLTPMAVPSSFTDNASTLASLRMLRVYLRTYALDQMVQASNSSAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGEPPGTPKVRSSHFFLLGIFPSIVLGLCWKLLTRVLCGGYHDRTFIPDSINFGVSGERVGKKDQKRKAHGTPPTAAHKRPRKQKASDL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03943 468 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 1 458 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Trre16g03943 468 MobiDBLite consensus disorder prediction 437 468 - -
Trre16g03943 468 SMART sant 126 175 IPR001005 -
Trre16g03943 468 MobiDBLite consensus disorder prediction 16 34 - -
Trre16g03943 468 Gene3D - 99 186 - -
Trre16g03943 468 MobiDBLite consensus disorder prediction 1 34 - -
Trre16g03943 468 Pfam SANT/Myb-like domain of DAMP1 102 176 IPR032563 -
Trre16g03943 468 SUPERFAMILY Homeodomain-like 127 177 IPR009057 -
Trre16g03943 468 FunFam DNA methyltransferase 1-associated protein 1 98 185 - -
Trre16g03943 468 CDD SANT_DMAP1_like 130 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03943 Trre-Chr16 44536398 44541326 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03943 SANT_DAMP1_like 1.1e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03943 K11324 - gmx:100818926 701.434