Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03942 ATGGAACCTCCTCTCATCAACGACTCTACTTTCTCTTCATCCAACCCTTCTTTGTCAGAAATTTGGCCACATTTCCCTCCACAAAACAACAGCAACAACAACAACAAGAAAAGAAAACTAGCACTCTCAGGTTCTTCTCAAAACAACAACCAAAACACAACTTCAGTACTAGTACCTGGTGATGGTAGCAGTAACAACATTTCATCAGAGGAACATCAACAACAAAATGTCAAACCTTCTTCTCAGCCTCATCCTAAGCAAGACTATATTCATGTCAGAGCCAGAAGAGGCCAAGCCACTGATAGCCACAGTCTTGCTGAAAGAGCAAGAAGAGAAAAGATTAGCGAGAGGATGAAAATTCTACAAGATTTAGTTCCAGGATGTAGCAAGGTAATTGGTAAAGCACTTGTGTTGGATGAGATAATCAATTATATTCAATCACTGCAAAGCCAAGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCGAGATTGAATATGAACACCTCTATTGAGTATTTCCCTTCAAAAGATGTTGGTGCTCAGCCATTTGACCTTTCTGGAATAATATTTGGACCGCAAGCAAGCCGAGGATATGCTCAGGGATCACAATCAGGGTGGCTACATATGCAGATAACTGGTGGTTTCAATAAAGCATCATAA 666 0.4009 MEPPLINDSTFSSSNPSLSEIWPHFPPQNNSNNNNKKRKLALSGSSQNNNQNTTSVLVPGDGSSNNISSEEHQQQNVKPSSQPHPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCSKVIGKALVLDEIINYIQSLQSQVEFLSMKLEAVNSRLNMNTSIEYFPSKDVGAQPFDLSGIIFGPQASRGYAQGSQSGWLHMQITGGFNKAS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03942 221 MobiDBLite consensus disorder prediction 1 85 - -
Trre16g03942 221 Gene3D - 95 174 IPR036638 GO:0046983
Trre16g03942 221 FunFam Basic helix-loop-helix transcription factor 95 168 - -
Trre16g03942 221 Coils Coil 145 165 - -
Trre16g03942 221 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 198 IPR024097 GO:0006355
Trre16g03942 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 98 148 IPR011598 GO:0046983
Trre16g03942 221 CDD bHLH_AtBPE_like 88 169 - -
Trre16g03942 221 Pfam Helix-loop-helix DNA-binding domain 102 149 IPR011598 GO:0046983
Trre16g03942 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 167 IPR036638 GO:0046983
Trre16g03942 221 MobiDBLite consensus disorder prediction 1 83 - -
Trre16g03942 221 SMART finulus 104 154 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03942 Trre-Chr16 44513006 44514822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03942 35 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 55.615 4.28e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre16g03942 HLH 2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03942 - - gmx:100799646 285.804