Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03928 ATGGGAACTGATAGTTGTGAAGTGGTAGAGAAATTACCAGATCCCCGCTCTTTTAAGGTACATCGGAGAATGTGCACAGAACTCAAAAAATTAGTTGATAGAGTGTTAAAGATATTTCCGCAAATAGAGGAAGCACGCCCTCGGTCCTCATCAGGAATACCCGCTCTCGTTTTGCTAATCAGTACACTTGATAAAGCCAAACAACTTTTGCATTATTGTTCTGATTCTAGTAAACTCTACCTGGCTATGACAGGGGAGTCAATAGTGTCAAAATGCCAAAAGGCAAGAAAGTCATTAGAGAAAAGCTTAGTGCAGATTCAGGATATAGTTCCTGTTATGTTGGCTGCAGAGATTTCTCGAATAGTTGATGATCTAAGGTGTGTGACCTTTGTCCTGGATTCTGCTGAAGAAGAGGCTGGAAGGGTTATGAGAGAATTGCTCCAGCAAGGTCCTTCAACCATGGATAACGATTCAAAAGAAAACTCAGATGTCAAATCTCTTCAGTTTGCGGCGGCAAGACTTAGTATTACATCCGCAACATCCGTCGTAATAGAAAAAAGATCTATTGGGAAGTTACTACAAAAAGTTGGACCACAAGAGGAAAATAAAATGGCGATCTTGAAAAATCTGTTGTATCTTGTGAAAAAGTATGGAAACTTATTAAATACAGGAGAACAAGCGAAGGTCTATTCTCATCATGAAGAACCAGCTGCAACTGAGAACTCTGGTTGTGATTCTTTATGCACCGATCATGTGAAGTTGGGGCCGTATTTGAACCATGATCAGTATGGAACACGTGTCAGCGAGTTGAGTAGAGTTGCACCCCCGAAGGAATACATTTGTCCAATATCTTTAAGGTTGATGTATGATCCTGTTGTCATTGCTTCAGGAGAAACATGCGAAAGGATGTGGATACAGAAATGGTTTGATGAGGGTCATTTTATATGCCCGAAAACTAAAAAGAAACTGCCGCATATGGAGATGACTCCTAACGTTGCTTTAAAGAAAGTAATATCAAACTGGTGCAAAACTAATGGAGTCTCGATTCCTAACCCAAGTAGGCAGGCAGAAGGCATTCGCTTGTGGGAAGATTCCATCGCTTCCATTAAGAGTTTTGGAAGTTCCATGAATGGTTTGAACTTGCCAATGGATCTTAGTAACATTTCACTTGGATCGTTAGATAACAGTTATAATTCAGACTCCTCACTTGTGAAGGCTAGTCATGGCTTAAATTCGATGTTGATCAACACCAGAAATGGTTCTCGCGGGCATCAATCTCATTCACAAACACATGACAAATATCTGGTACCCTTGTCTAAACTTCACGAGCGTCAATGGGATTCGCAATGCCAAGTCGTCGAAGATATGAAAATAGGTTTCAAATGCAATAACCAAGGTCTTAGCTCCATGTCGTCGGACAATTTCATTGACCCACTTGTGAGGTTTCTGAGCACGGCATATGATAAGCATGACACAAAAGCTCTGAGAAGTGGATGTCAGTTGCTGTTGGAATTTACAAAGTACTGCAGAAATTGTGCGACAAACTTGAGTGAAGATACATGCAGTGTGTTGGCAAGTCTTCTAGAGTCAGACGTGATTGGTGAAGCTCTTGCCATACTGGAAACATTGTCGAATCAGTGGTCCAATAAAGCTAACATTGCAGCTTCCGGTGCACTAACCTCTATCTCAAAGATCCTGGATTCTGGTAACAAAGAGTACCAACACAGAGCTATTAGAATAATGTGCAATTTTTCATCCAAAACCGAACTTTGTTCATTCATGGCGTCTCTCGAGTGCATCCCAAAAATACTACCATTTTTCGAAGACAAATCCCTTTGGAGAGACTGTATATGTATATTGAAAAACCTCTGTGATACTAAAGATGGTAGGATTTCTATTGTTGAAACTAAGGGATGCATGTCTTGTGTTGTTGAAATACTTGGTTCTGGCACCGACGAAGAAAAGGAACCGGCACTAGCTATTGTACTCTCTTTGTGTTCTCAAAGCTTGGAATATTGTGAGCTGGTTATGTACGAGGGTATTATACCATATCTTGTCAATATCTCCAATATGGGAAACGATAGGTCAAAGGTGATAGCGTTTGAACTACTCCGACTTTTAAGGGAAGTTGAGCCAAATCTCAACAACTCTCAAGATTCTAACGAGGATCACTTTGAAGAAAAGAAACCGTCAAAGAAGTCCAACTCAATTTTTAAGAAGCTATCACGGTTCGGAAAATAA 2241 0.4043 MGTDSCEVVEKLPDPRSFKVHRRMCTELKKLVDRVLKIFPQIEEARPRSSSGIPALVLLISTLDKAKQLLHYCSDSSKLYLAMTGESIVSKCQKARKSLEKSLVQIQDIVPVMLAAEISRIVDDLRCVTFVLDSAEEEAGRVMRELLQQGPSTMDNDSKENSDVKSLQFAAARLSITSATSVVIEKRSIGKLLQKVGPQEENKMAILKNLLYLVKKYGNLLNTGEQAKVYSHHEEPAATENSGCDSLCTDHVKLGPYLNHDQYGTRVSELSRVAPPKEYICPISLRLMYDPVVIASGETCERMWIQKWFDEGHFICPKTKKKLPHMEMTPNVALKKVISNWCKTNGVSIPNPSRQAEGIRLWEDSIASIKSFGSSMNGLNLPMDLSNISLGSLDNSYNSDSSLVKASHGLNSMLINTRNGSRGHQSHSQTHDKYLVPLSKLHERQWDSQCQVVEDMKIGFKCNNQGLSSMSSDNFIDPLVRFLSTAYDKHDTKALRSGCQLLLEFTKYCRNCATNLSEDTCSVLASLLESDVIGEALAILETLSNQWSNKANIAASGALTSISKILDSGNKEYQHRAIRIMCNFSSKTELCSFMASLECIPKILPFFEDKSLWRDCICILKNLCDTKDGRISIVETKGCMSCVVEILGSGTDEEKEPALAIVLSLCSQSLEYCELVMYEGIIPYLVNISNMGNDRSKVIAFELLRLLREVEPNLNNSQDSNEDHFEEKKPSKKSNSIFKKLSRFGK 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03928 746 Gene3D - 457 744 IPR011989 -
Trre16g03928 746 CDD RING-Ubox_PUB 276 328 IPR045210 -
Trre16g03928 746 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Trre16g03928 746 MobiDBLite consensus disorder prediction 715 746 - -
Trre16g03928 746 SUPERFAMILY ARM repeat 440 714 IPR016024 -
Trre16g03928 746 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Trre16g03928 746 SUPERFAMILY RING/U-box 269 351 - -
Trre16g03928 746 MobiDBLite consensus disorder prediction 720 734 - -
Trre16g03928 746 PANTHER U BOX DOMAIN-CONTAINING 22 712 - -
Trre16g03928 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 349 IPR013083 -
Trre16g03928 746 Pfam U-box domain 276 345 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03928 Trre-Chr16 44393983 44397044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03928 15 713 U-box Gene Family AT4G36550 38.244 5.18e-136 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03928 - - gmx:100798951 935.636