Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03925 ATGTCATTCAAAAGCATAGTGCGCGAGCTCAAGGGGATAAAAAATGGTATAGGTAGCATATCAAAGCGGAGTTTTGAAAGCAAGCATTGGCTCTATCGTTCAAAGTCACATGTTGCTCCGGATGTAACTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAGTCTACCACCTGAATTACTTTTGGATATAATCAGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCCCGTGCTGTTGTTGTATTTTGTGCTTCGGTATGTAAATCATGGAGGTCCGTCACAAAAGAGATCATCAAGACACCTCAGCAATGTGGAAGGATCACATTTCCTATTTCATTGAAGCAGCCTGGTCCCCGTGATTATCCGATACAGTGCTTTATTAGGAGGAACCGAGAAACTTCTACATTCATGTTGTACTTGGGTTTGGTGCCATCGGAGCATGAGAGCAATAAGTTGTTATTAGCCGCCAGAAAGATAAGAAGGGCCACAGGCACCGACTTTGTCATATCCTTGGCTGCAGACGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGGTCTAATTTTTGGGGCACCAAGTTTGCTATATACGATAGTCAACCTCCACATGACGCTGCAGTTCAACCAAATCGTCGACCAAGTGGGAGATCTCATTCTAAGCAGGTCTCACCAAGAGTTCCAGCATGTAGCCATCTTGTCAGCACAATTTCCTATGAGCTGAATGCTCTCTGGACTAGAGGGCCAAGAAGAGTGCACTGCGTCATGAACTCTATACCTATCTCAGCTATTCAGGAAGGGGGAAACGCCCCAACTCCAACATCCTTACCTCAAATATTCAGTGAACCTTTTCCTTTCTCACCAGCACTGAAAGAAAAAAGTCCAATGCCCGATTCGTACTCTGGCAGCCTATCAGAGCTACCTGAACTAAGCCAAGGCTCAACTGATCCCTTGATACTCAAAAACAAGTCTCCGAGATGGCATGAACAGCTCCAGTGTTGGTGCCTAAACTTCATGGGTCGTGTTACAGTTGCATCTGTAAAGAACTTTCAACTTGTTGCTGCTGTTGATCCGTCTCATAATGTTTCGCCTGCAGAGCAAGAAAGGGTAATCTTGCAGTTTGGAAAGATCGGGAAAGATATATTCACAATGGACTACTCATACCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACAAGCTTTGATACTAAACCCGCCTGTGAATGA 1239 0.4496 MSFKSIVRELKGIKNGIGSISKRSFESKHWLYRSKSHVAPDVTPIEPIQQGQWASLPPELLLDIIRRVEESETSWPARAVVVFCASVCKSWRSVTKEIIKTPQQCGRITFPISLKQPGPRDYPIQCFIRRNRETSTFMLYLGLVPSEHESNKLLLAARKIRRATGTDFVISLAADDFSRASNKYVGKLRSNFWGTKFAIYDSQPPHDAAVQPNRRPSGRSHSKQVSPRVPACSHLVSTISYELNALWTRGPRRVHCVMNSIPISAIQEGGNAPTPTSLPQIFSEPFPFSPALKEKSPMPDSYSGSLSELPELSQGSTDPLILKNKSPRWHEQLQCWCLNFMGRVTVASVKNFQLVAAVDPSHNVSPAEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03925 412 Gene3D Tubby Protein; Chain A 111 412 IPR025659 -
Trre16g03925 412 PANTHER TUBBY-RELATED 49 410 - -
Trre16g03925 412 MobiDBLite consensus disorder prediction 300 314 - -
Trre16g03925 412 PRINTS Tubby superfamily signature 369 388 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 168 184 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 184 208 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 340 356 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 322 339 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 233 260 IPR000007 -
Trre16g03925 412 PRINTS Tubby superfamily signature 390 412 IPR000007 -
Trre16g03925 412 ProSitePatterns Tub family signature 2. 397 412 IPR018066 -
Trre16g03925 412 SUPERFAMILY Tubby C-terminal domain-like 102 412 IPR025659 -
Trre16g03925 412 MobiDBLite consensus disorder prediction 294 314 - -
Trre16g03925 412 CDD F-box_AtTLP-like 53 97 - -
Trre16g03925 412 SUPERFAMILY F-box domain 48 97 IPR036047 GO:0005515
Trre16g03925 412 Pfam Tub family 114 407 IPR000007 -
Trre16g03925 412 MobiDBLite consensus disorder prediction 204 228 - -
Trre16g03925 412 Pfam F-box domain 53 98 IPR001810 GO:0005515
Trre16g03925 412 Gene3D - 46 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03925 Trre-Chr16 44384647 44386367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03925 1 412 TUB Transcription Factor Family AT2G18280 62.500 7.03e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre16g03925 Tub 3e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03925 K19600 - gmx:100805380 686.411