Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03911 ATGAAGTTTGATACGGAAGATCACGCATATAGATTTTATAATGTATATGCTGGCTTTGCTGGTTTTAGCATTAGAAAAGATTGGAGAAACAAAAGCAAATTAGATAAAAAGACAGTGATGTCTCGAAAGTTTGTGTGTTTTAAAGAAGGCTTCAAGAAGATCAAAGAATATGATGATAAAGTGTCTCGTAAAGATATCAGAACTGGATGTTTAGCACATGTTGTCATCGGTCGGGAATTGAGTGGAAACTATGTTGTTACATCTTTCGTAAAAGACCATAATCATGAGCTTGCATCCCCTAGAAGTAAGCATAAATTACCATCACAAAGGAGGGTTTCTGCCGCTCAAGCAGCTGAGGTAGAAATGGCAAACCGATCTGGTATACGCCAAAAATTGATTTTTGAGTTTATAAGTCAACACGTTGGAGGGAGGGAGAATGTTGGTTGCACTTCTAAAGATATTAGCAATCATTTAACTGCCAAGAGGATGAAGGAAATGAAGGAAGGTGAAGCATATACTCTACTTCATTATTTTAAATCAAAGCAAACTGAGAATCAATCATTCTTTTATGATATTCAACTTGATGTTGATAATCAAATAACTAACATTTTCTGGGCAGATGCTAAAATGGTTTTGGATTATGTTTATTTTGGAGATGTAGTGTGTTTTGATACGACATACCGCACTAATAAGAATTTACGACCATTTGCTCCTTTCATTGGATTCAACCATCATAAAGAAAGTGTGTTATTTGGTGCAGCACTGTTATATGATGAAACTGTTGCATCATTTGAGTGGTTGTTCAAGACTTTTCTTAAGGCAATGTGTGGAAAGAAGCCGAAGACAATTTTCACAGATCAAGATCCTGCCATGGCAAAAGCAATATCAGAAGTTTTTCCTGAAACATATCATCGTTTATGCTTGTGGCATTTATTTCAGAATGCACTTAAAAATGTTAATCATGCCTTTAAAAGATCAGATTCTTTTGCTACAGATTTGAGAAGTTGCATTTATGATTTTGAGTATGAGGATGACTTTCTTACTGCTTGGAATTCATTACTTGACAAGCACAACCTTCACCAAAATAAATGGATGCAAGATTTGCTTAAGAAAAAGGAAAAATGGGCTTTAGTATATGGACGGAACACGTTTTCTGCTGGTGCTACAACAACACAATTAAGTGAGAGCTTCAATGGTCGTTTAAGGCTTTACATGAAGTCCACTTATAACGTGTTGGAGTTTTTCAGACACTTTGAAAGATTGATAGAGGACATGCGTTATAAGGAGATTGAGTCTAACTATGAAATGAGTCAGAAGATGCCATCATTAAATATGAATATCATGTTACTCAAAACCGCAAGAGATGTCTACACACCAACAATTTTTTCTCTAGTTCGTGGAGAATATGAAAAGTCTTGTAATCTTCTTTTGAAGAGTTGCACTCAGAACTTGCAATTATATGAATATGAAGTGAGTTTTTTTGCGAACATGAGGCAACATAAAGTTACATTCAACTCTGAAGATCAAAGTGTTGAGTGCAGTTGTCGACTTTTTCAATTCATTGGCATCCTTTGTTGTCATGCTCTTCGAGTACTTAATCATCTGAATGTAATTGTTATTCCCCAAAAATACATATTGAAAAGGTGGACTAAGCAAGCTCGAAGTGGTTGTGTGCTAGACAATAAGGGACAAATTATTAAAGAAGATCCAAAGTTGGTTGTGTCAAATCGCTTAAGAGATCTATGTCGCACTTCAGTCGGAATATCAAGCAAGGCTGCTGAATCTGGAGAAGCTTCAGCATTTTTAGCAAGAAAATTGATGGAAGCTGACATTGAAGTTGATAAAATCTTAAGCAAAAGATCTTCCACACAAACAACAAATATTGGTGATGTAAATAGTCAAACCAATGAGATAGTAACAGATGATATTACAACTGCATCACAAGCCATTGGTATAAAAAAGAAAGATGGTAAATCACGGTTAAAAGGCAGACCAAAGAGTTGTGTGGAGAAAAAATACAAAAGATGCAAAGGCACTCCCAAGTGTAGTTCTGTGACACAAAATTATTCAACCACGTCCATGCCAATTATGCAAAATTTTCCATTTTCACATAGATACCAAGAACTAGTAGTAGCTGGTATTAATACAACACAGTTTAATGACAAGAATAAGGAAAATGGAGAACACATGGAAGAATTTGGTTTTTCTACTTATGCTTATCAAGGGCAAGAACATCTAAGTCAAAGTCCGGTGTTGAACTCAACGAATGTAGAGCTTGAGGAACCATCTGCAGAGCTTCAACCAAGTCCTTCGGAATTTAACCAACATGATGGCTTAACATCTTGGGAAGGAAACAAGGAAACCAACTAA 2370 0.3574 MKFDTEDHAYRFYNVYAGFAGFSIRKDWRNKSKLDKKTVMSRKFVCFKEGFKKIKEYDDKVSRKDIRTGCLAHVVIGRELSGNYVVTSFVKDHNHELASPRSKHKLPSQRRVSAAQAAEVEMANRSGIRQKLIFEFISQHVGGRENVGCTSKDISNHLTAKRMKEMKEGEAYTLLHYFKSKQTENQSFFYDIQLDVDNQITNIFWADAKMVLDYVYFGDVVCFDTTYRTNKNLRPFAPFIGFNHHKESVLFGAALLYDETVASFEWLFKTFLKAMCGKKPKTIFTDQDPAMAKAISEVFPETYHRLCLWHLFQNALKNVNHAFKRSDSFATDLRSCIYDFEYEDDFLTAWNSLLDKHNLHQNKWMQDLLKKKEKWALVYGRNTFSAGATTTQLSESFNGRLRLYMKSTYNVLEFFRHFERLIEDMRYKEIESNYEMSQKMPSLNMNIMLLKTARDVYTPTIFSLVRGEYEKSCNLLLKSCTQNLQLYEYEVSFFANMRQHKVTFNSEDQSVECSCRLFQFIGILCCHALRVLNHLNVIVIPQKYILKRWTKQARSGCVLDNKGQIIKEDPKLVVSNRLRDLCRTSVGISSKAAESGEASAFLARKLMEADIEVDKILSKRSSTQTTNIGDVNSQTNEIVTDDITTASQAIGIKKKDGKSRLKGRPKSCVEKKYKRCKGTPKCSSVTQNYSTTSMPIMQNFPFSHRYQELVVAGINTTQFNDKNKENGEHMEEFGFSTYAYQGQEHLSQSPVLNSTNVELEEPSAELQPSPSEFNQHDGLTSWEGNKETN 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03911 789 SMART 26again6 511 538 IPR006564 GO:0008270
Trre16g03911 789 Pfam MULE transposase domain 220 314 IPR018289 -
Trre16g03911 789 Pfam FAR1 DNA-binding domain 11 98 IPR004330 -
Trre16g03911 789 ProSiteProfiles Zinc finger SWIM-type profile. 500 536 IPR007527 GO:0008270
Trre16g03911 789 Pfam SWIM zinc finger 513 536 IPR007527 GO:0008270
Trre16g03911 789 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 1 611 IPR031052 GO:0006355
Trre16g03911 789 MobiDBLite consensus disorder prediction 752 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03911 Trre-Chr16 44250581 44253247 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre16g03911 MULE 1.7e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03911 - K17604 qsu:112016759 883.248