Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03898 ATGACTAGAGGAAAGGTGAAAATTTCTTTCATTGTCAATGATGCTGCAAGGAAAGCAACATATAAGAATAGGAAGAACAGTCTATTTAAGAAAGTTGACGAACTAAGCACTCTTTGTGGAATTGAAGCATGTGCTATAGTTTTTGGTCCTTATGAATCTGAACCTGAGATTTGGCCAACGCCATCAGGGGTCCAACGAGTGCTCTCAAAATTTAGGACAACTCCTGAATTTGAGAAGTGCAAAAAAATGGTTAATCAAGAGGCTTTCTTGAAACAAAGAGTAAAGAAGGCTGAAGAACAACTGAAGAGATTGACGAAAAACAACAAAGATATAGAGATGACAAATCTCTTGTTTGAATGTCTAAAAGAAGGCAAGGTTGTCCATAATAATATGTCAAAGATTGATTTGAATGCTCTTGTTTGGTTGATTGACAAGAATTTAAAAGACATCGGTAGAAGGTTGGAAGCAAATGATAATAATGGTGATAGTCAAACACAAATAATAACTAACCAAAGCCAAGTCCAACTTCAAGTGCCACATGTGCCGCAACCACCAACAGTAGCATCAAGCAATGAAGATATGACGACGATGATGGCAAAGTTAGGGTGGCTATAA 615 0.3707 MTRGKVKISFIVNDAARKATYKNRKNSLFKKVDELSTLCGIEACAIVFGPYESEPEIWPTPSGVQRVLSKFRTTPEFEKCKKMVNQEAFLKQRVKKAEEQLKRLTKNNKDIEMTNLLFECLKEGKVVHNNMSKIDLNALVWLIDKNLKDIGRRLEANDNNGDSQTQIITNQSQVQLQVPHVPQPPTVASSNEDMTTMMAKLGWL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03898 204 Gene3D - 13 112 IPR036879 GO:0003677|GO:0046983
Trre16g03898 204 Coils Coil 80 114 - -
Trre16g03898 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre16g03898 204 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Trre16g03898 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Trre16g03898 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre16g03898 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre16g03898 204 PANTHER MADS BOX PROTEIN 3 122 - -
Trre16g03898 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Trre16g03898 204 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Trre16g03898 204 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Trre16g03898 204 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03898 Trre-Chr16 44126395 44127009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03898 1 202 Type I MADS-box Gene Family AT5G48670 48.276 3.19e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre16g03898 SRF-TF 5.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03898 - - psat:127080453 227.254