Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03896 ATGGGAGGAACAACAACATGCACATGTGGTATGTTTCATCCTCAAACCATGCTTTTCTCTAACTACCAACAACAACAACATCAACATCATGATGATCATTACGATAACCATTTTGACACTTACTCTTACTCTACTCCTTCTTCTTCTTCTGTTGATTGCACACTCTCTCTTGCTACACCTTCCACTCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCCCTTTCCAATTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAATCTCAAACCAAATCAAACCGAGGTAACAATATTGGTAATAACTCTAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGCGACACCACTTCTACACCACTCTGGAGAAACGGTCCCCGCGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAACCGTTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAACAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGCTTCATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCTAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 687 0.3988 MGGTTTCTCGMFHPQTMLFSNYQQQQHQHHDDHYDNHFDTYSYSTPSSSSVDCTLSLATPSTRLSEDQDKQNRRSSLSNFFWNKNPSKSKQNSQSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATVNATSAVTNSGVIESGQVYNNNSWYAHQQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03896 228 MobiDBLite consensus disorder prediction 62 112 - -
Trre16g03896 228 Pfam GATA zinc finger 119 153 IPR000679 GO:0006355|GO:0043565
Trre16g03896 228 CDD ZnF_GATA 118 150 IPR000679 GO:0006355|GO:0043565
Trre16g03896 228 ProSitePatterns GATA-type zinc finger domain. 119 144 IPR000679 GO:0006355|GO:0043565
Trre16g03896 228 Gene3D - 115 170 IPR013088 GO:0006355|GO:0008270
Trre16g03896 228 MobiDBLite consensus disorder prediction 74 112 - -
Trre16g03896 228 PANTHER GATA TRANSCRIPTION FACTOR 18 5 228 IPR044272 GO:0003700|GO:0009908
Trre16g03896 228 ProSiteProfiles GATA-type zinc finger domain profile. 113 149 IPR000679 GO:0006355|GO:0043565
Trre16g03896 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 116 161 - -
Trre16g03896 228 SMART GATA_3 113 165 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03896 Trre-Chr16 44081794 44082927 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03896 47 228 C2C2-Gata Transcription Factor Family AT3G50870 45.378 1.43e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g03896 GATA 1.8e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03896 - - gmx:100790571 218.779