Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03895 ATGATGCATCATTGTTGTAGTAGCTCTCAACAAGCTTACATAATGGGAGGAACAACAACATGCACATGTGGTATGTTTCATCCTCAAACCATGCTTTTCTCTAACTACCAACAACAACAACATCAACATCATGATGATCATTACGATAACCATTTTGACACTTACTCTTACTCTACTCCTTCTTCTTCTTCTGTTGATTGCACACTCTCTCTTGCTACACCTTCCACTCGTTTATCTGAAGATCAAGACAAACAAAACCGTCGTTCTTCCCTTTCCAATTTCTTTTGGAACAAGAATCCTTCTAAATCTAAACAAAATTCTCAATCTCAAACCAAATCAAACCGAGGTAACAATATTGGTAATAACTCTAACAATGATTCTCTTCTCGCTCGTCGATGTGCTAGTTGCGACACCACTTCTACACCACTCTGGAGAAACGGTCCCCGCGGCCCAAAGTCACTATGCAATGCATGTGGGATTAGATACAAAAAAGAAGAAAGAAGAGCAAATGCTGCAACCGTTAATGCCACGTCAGCAGTAACAAACAGTGGAGTAATCGAGTCAGGGCAAGTCTACAACAACAATTCATGGTACGCACATCAACAGAGTCAAATGTATGGAAATGAGTTACGCTTCATGGACGATTCAGATGCAGAATCAGAAAATGGAATTCCTAATTTTCTTTCTTGGAGACTTAACACAAGCCTTGTTCATGATTACACAAGATGA 729 0.3964 MMHHCCSSSQQAYIMGGTTTCTCGMFHPQTMLFSNYQQQQHQHHDDHYDNHFDTYSYSTPSSSSVDCTLSLATPSTRLSEDQDKQNRRSSLSNFFWNKNPSKSKQNSQSQTKSNRGNNIGNNSNNDSLLARRCASCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAATVNATSAVTNSGVIESGQVYNNNSWYAHQQSQMYGNELRFMDDSDAESENGIPNFLSWRLNTSLVHDYTR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03895 242 Gene3D - 129 184 IPR013088 GO:0006355|GO:0008270
Trre16g03895 242 MobiDBLite consensus disorder prediction 76 126 - -
Trre16g03895 242 CDD ZnF_GATA 132 164 IPR000679 GO:0006355|GO:0043565
Trre16g03895 242 Pfam GATA zinc finger 133 167 IPR000679 GO:0006355|GO:0043565
Trre16g03895 242 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 175 - -
Trre16g03895 242 MobiDBLite consensus disorder prediction 88 126 - -
Trre16g03895 242 PANTHER GATA TRANSCRIPTION FACTOR 18 19 242 IPR044272 GO:0003700|GO:0009908
Trre16g03895 242 SMART GATA_3 127 179 IPR000679 GO:0006355|GO:0043565
Trre16g03895 242 ProSitePatterns GATA-type zinc finger domain. 133 158 IPR000679 GO:0006355|GO:0043565
Trre16g03895 242 ProSiteProfiles GATA-type zinc finger domain profile. 127 163 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03895 Trre-Chr16 44081752 44082927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03895 61 242 C2C2-Gata Transcription Factor Family AT3G50870 45.798 2.26e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre16g03895 GATA 2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03895 - - gmx:100799154 231.491