Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03888 ATGCAACAGAAAATCAAAATCTGTGAAGTCGAGGGGATGAAAAATGGAACAGGTAGCATATCAAAGTGGGGTGATGTGAGCGAGCGCTATCGCGCAAAGTCACACCTTACGCTCGATGACGATGTGAATGATTTCCGGCACATTAGTTCTCATTCGTGTCAAGATCAAGCCTTGCTCGACACCAGAGGTATTCAACCGGGACAATGGGAAACTCTACCACCTGAATTACTTTTGGACATAATCCGGCGGGTTGAAAAGAGTGAGACATTTTGGCCTGCGCGTGCTGTTGTTGTCTCTTGTGCTTCGGTATGTAAATCATGGAGGTCTGTAACGAAAGAGATTATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCAATTTCATTGAAGCAGCCCGGTCCCCGTGATCATCTGATGCAATGCTATATTAGGAGGAATAGAAGAAATTCTACATTCATGTTGTACTTATGTTTGCTGCCATCGGCGAATAAGAGTAAGAAGTTGTTATTAGCCGCAAAATGGAAGAAATGGTTTGAATTTGCCATATCCTTGGCTGCAGACGATTTTTCTCAAGCAAATTGTGTTGGTAAACTGAGGTCTAATTTTTGGGGCACCAAGTTCGCTATATACGACACTCAACCTCCACATGACGCTGCAGTTCAACCAAATTGCCGGTCAAGCGAGGGAGTTAATTCTAAGGTGTCACCAACAAGTGTTCCAGAATATAACCATCTTGTTAGCACCATTTCCTATGAGTGGCTAACTAGAACACCAAGACGAGTGCACTGCGTCATGAACTCTATACCTGTCTCGGCTATTCAGGAAGGGGGGAACGCTCCGACTCCAACATCATTACCTCAAATATTTGATGAACCCTTTTCTCCTTCACAAGTACTGAAGGGAAAAAGTCCAATGACAGATTCATACTCTACAAGCCGCCTATCAGAGCAACCAGGACTGAGCCAAGGCTCATTCGAGCCCTTGATACTAAAAAACAAGGCTGCCAGATGGGATGACTGGTGCAAGAGTTGGTGCCTAGACTACATGGGTCGAGATATAAAGTCATCTGGAAGAAACTTTCAACTTGTAGCTGTTGATCCGTCTCATAATGTTTCGCTTGCGGAACAAGAAAGGGTAATCTTGCAGTTTGGAAAGGTTGGAAAAGATATATTTATCATGGAGTACTCTTATCCACTCTCTGCCTTCCAAGCCTTTGCCATCTGCTTGACATCATTCATTTGTAACATGTACAAATCAAAATGCAAAGCTTAA 1275 0.4322 MQQKIKICEVEGMKNGTGSISKWGDVSERYRAKSHLTLDDDVNDFRHISSHSCQDQALLDTRGIQPGQWETLPPELLLDIIRRVEKSETFWPARAVVVSCASVCKSWRSVTKEIIKNLQQCGKITFPISLKQPGPRDHLMQCYIRRNRRNSTFMLYLCLLPSANKSKKLLLAAKWKKWFEFAISLAADDFSQANCVGKLRSNFWGTKFAIYDTQPPHDAAVQPNCRSSEGVNSKVSPTSVPEYNHLVSTISYEWLTRTPRRVHCVMNSIPVSAIQEGGNAPTPTSLPQIFDEPFSPSQVLKGKSPMTDSYSTSRLSEQPGLSQGSFEPLILKNKAARWDDWCKSWCLDYMGRDIKSSGRNFQLVAVDPSHNVSLAEQERVILQFGKVGKDIFIMEYSYPLSAFQAFAICLTSFICNMYKSKCKA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03888 424 Gene3D Tubby Protein; Chain A 129 413 IPR025659 -
Trre16g03888 424 Gene3D - 66 117 - -
Trre16g03888 424 Pfam F-box domain 69 114 IPR001810 GO:0005515
Trre16g03888 424 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Trre16g03888 424 PRINTS Tubby superfamily signature 331 348 IPR000007 -
Trre16g03888 424 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Trre16g03888 424 PRINTS Tubby superfamily signature 349 365 IPR000007 -
Trre16g03888 424 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Trre16g03888 424 MobiDBLite consensus disorder prediction 300 319 - -
Trre16g03888 424 Pfam Tub family 130 413 IPR000007 -
Trre16g03888 424 SUPERFAMILY Tubby C-terminal domain-like 120 413 IPR025659 -
Trre16g03888 424 PANTHER TUBBY-RELATED 49 413 - -
Trre16g03888 424 SUPERFAMILY F-box domain 64 113 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03888 Trre-Chr16 43992955 43994556 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03888 49 413 TUB Transcription Factor Family AT2G18280 49.600 4.71e-109 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre16g03888 Tub 1.6e-72 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03888 K19600 - gmx:100805380 445.662