Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03887 ATGTCATTGAAAAGCATAGTAAAAAATGGAATATGTAGCATTCCAAGCAAGCGTTGGCTCTGTCGATCAAAGTCACATGTTGCTTCGGATGTTACTCCAATTGAACCTATTCAACAGGGACAGTGGGCAAATCTACCACCTGAATTGCTTTTGGACATAATCCGGCGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGTGCTGCTGTTGTCTTTTGTGCTTCGGTATGTAAATCATGGAGATCCGTAACGAAAGAGATCATCAAGAATCTTCAACAATGTGGAAAGATCACATTTCCTATTTCATTGAAGCTGCCCGGTCCCCGTGATCATCTGATGCAATGCTTTATTAAAAGGATCAAAGAAACTTCGACATTTCTGTTGTACTTAGGTTTGATGCCATCGGGGAATGAGAGTAATAAGTTTTTATTAGCTGCCAAAAAGATAAAAAGGGCTGCACGCATCGACTTTGTCATATCCTTGGCTGCAGACGATTTTTCTCCAGCCAGTAACAATTATGTTGGTAAACTGAGGTCTAATTTTTCGTGCAACGAGTTCACTATATGTGACTATCAACCTCCATATGATGCTGCAGTTCAACCAAATTGTCGAACGAGCAGGAGATTTAATTCTAAGAAGGTGTCACCAAGAAGTGCATATCGCCATTGTGTTAGAACCATTTCCAACATGCTGTTCCTTAGAAATCCAAGAAGTGTGCACTGCTTCATGAACTATATACCTATCTCAGCTATTCAGGAAGGGGGAAACCCCGGCCTGACTCCAGCATCTTTATCTGAAATATGTGATGAAACTTTTTCTCCTTCTCCGGCACTAAACCAAGGCTCAGTCAAGCCCTTGATACTCCAAAACAAGGCTCCCTTATGGAATGAGCAGAGTAAGAGTTGGTGCCTAGACTTCAAGGGCCGTGTTAAAGAGGCTTCTGATAAAAACTTTCAACTTGTAGCCGCAGCTGCTGTTGGTCCATCTCATAATGTTTCTCCTGCGAAGCAAGAAAAGATAATCTTGCAGTGTGGAATAATTGAAAAAGATATATTCTTCATGGACTACTCTTATCCAATGTCTACCTTCGAAGCCTTTACCATCTTCTTGACATCAATGTAA 1122 0.4153 MSLKSIVKNGICSIPSKRWLCRSKSHVASDVTPIEPIQQGQWANLPPELLLDIIRRVEESETSWPARAAVVFCASVCKSWRSVTKEIIKNLQQCGKITFPISLKLPGPRDHLMQCFIKRIKETSTFLLYLGLMPSGNESNKFLLAAKKIKRAARIDFVISLAADDFSPASNNYVGKLRSNFSCNEFTICDYQPPYDAAVQPNCRTSRRFNSKKVSPRSAYRHCVRTISNMLFLRNPRSVHCFMNYIPISAIQEGGNPGLTPASLSEICDETFSPSPALNQGSVKPLILQNKAPLWNEQSKSWCLDFKGRVKEASDKNFQLVAAAAVGPSHNVSPAKQEKIILQCGIIEKDIFFMDYSYPMSTFEAFTIFLTSM 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03887 373 CDD F-box_AtTLP-like 42 86 - -
Trre16g03887 373 PRINTS Tubby superfamily signature 288 305 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 358 373 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 337 356 IPR000007 -
Trre16g03887 373 PRINTS Tubby superfamily signature 306 322 IPR000007 -
Trre16g03887 373 PANTHER TUBBY-RELATED 38 373 - -
Trre16g03887 373 Pfam F-box domain 42 87 IPR001810 GO:0005515
Trre16g03887 373 Gene3D - 35 90 - -
Trre16g03887 373 SUPERFAMILY F-box domain 37 85 IPR036047 GO:0005515
Trre16g03887 373 Pfam Tub family 103 373 IPR000007 -
Trre16g03887 373 Gene3D Tubby Protein; Chain A 101 373 IPR025659 -
Trre16g03887 373 SUPERFAMILY Tubby C-terminal domain-like 93 372 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03887 Trre-Chr16 43986807 43988332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03887 1 373 TUB Transcription Factor Family AT2G18280 49.118 1.10e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Trre16g03887 Tub 5.6e-74 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03887 K19600 - tpra:123922804 548.895