Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03874 ATGGCACCCTCACCCCCACATAACTCTTCACCAGATGATGCCACACCTGATAATTCTACCCCTGATGATGCTGATGGATCATCATCAAGAAATTCACATTCTTCATCACACAAAGGTTCATCATCTTCACATGGTAGCAATAAAGATGATGTTAAGGCCTTAATTGGAGCTGCTATTGGAGCTGGATTTGTTATTCTTATCTTGGTTTGTTGTTGTTGTTTAATTTGTAAGAGGAGGAAAAAGAAGGGAAAACAACAAAATTATTATTATGGTCCTGGAGAACATTCACTTGGAAAAGGGAGCAATTATTACCACAGCGGACAACATCCTCATCCAAATTGGCAAGGAGGCCCAGGCCCAAGCCCACATGGAATGGATCATGTTGTTAGAGTCCAACAAGCACCAAATGGAAGTGGAGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGACATGAGTGCCAATTATTCATATGGAATGGGCCCACCTATGCCTCCTCCTTCACCAGGCCTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCAGCTACTAAGGGATTTGCTAATGAGAATATTATAGGACAGGGAGGTTTTGGTTATGTCCATAAGGGAATTTTGCCTAATGGAAAAGAAGTTGCTGTTAAAAGTTTAAAATCGGGTAGTGGGCAAGGCGAACGTGAGTTTCAGGCGGAGATTGATATTATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTAGCGGTGGACAAAGAATGTTGGTTTACGAGTTCGTTCCAAATAAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCAGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCCGATTTTGGATTGGCTAAGTTGACTACTGATACTAATACACATGTCTCAACTCGTGTCATGGGGACATTCGGGTACATGGCACCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCAGATGTTTTTTCATTTGGAGTAATGCTACTAGAACTGTTAACTGGTAAACGACCTTTGGATTTGACCAATGCCATGGATGAAAGCTTAGTCGATTGGGCTCGACCACTCTTGAATCAAGCACTGGAGGAGGATGGCAACTTTAGTGAATTGGTGGATCCGTTTTTGGAAGGAAACTACAATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTCGTCATTCTGCTAAGAAACGTTCAAAAATGAGTCAGATAGTAAGGGCATTAGAAGGTGATGTATCATTAGAAGACTTGAAGGAGGGGATGGTTAAATCTTCAGGGCATACTAGTGCTTATGCCTCTTCATCTGGCTCAGAATATGATACAAAACAATACAATGCAGATATGATGAAGTTCAGAATGGCAATAATGTCAAGTCAGGAATTTGGTGATAGCAGTGAGCTCCCTAGTAAGGAGATGGGTCGTCACTAG 1602 0.4157 MAPSPPHNSSPDDATPDNSTPDDADGSSSRNSHSSSHKGSSSSHGSNKDDVKALIGAAIGAGFVILILVCCCCLICKRRKKKGKQQNYYYGPGEHSLGKGSNYYHSGQHPHPNWQGGPGPSPHGMDHVVRVQQAPNGSGVWGAPHPLMNSGDMSANYSYGMGPPMPPPSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLNQALEEDGNFSELVDPFLEGNYNHQEMIRLAACAASSIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMVKSSGHTSAYASSSGSEYDTKQYNADMMKFRMAIMSSQEFGDSSELPSKEMGRH 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03874 533 Gene3D Transferase(Phosphotransferase) domain 1 269 483 - -
Trre16g03874 533 Pfam Protein tyrosine and serine/threonine kinase 196 395 IPR001245 GO:0004672|GO:0006468
Trre16g03874 533 SMART serkin_6 193 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03874 533 MobiDBLite consensus disorder prediction 1 48 - -
Trre16g03874 533 MobiDBLite consensus disorder prediction 11 48 - -
Trre16g03874 533 ProSitePatterns Protein kinases ATP-binding region signature. 199 221 IPR017441 GO:0005524
Trre16g03874 533 SUPERFAMILY Protein kinase-like (PK-like) 169 466 IPR011009 -
Trre16g03874 533 Gene3D Phosphorylase Kinase; domain 1 173 268 - -
Trre16g03874 533 FunFam proline-rich receptor-like protein kinase PERK1 171 268 - -
Trre16g03874 533 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 61 512 IPR047117 -
Trre16g03874 533 ProSiteProfiles Protein kinase domain profile. 193 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03874 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Trre16g03874 533 FunFam Proline-rich receptor-like protein kinase PERK1 269 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03874 Trre-Chr16 43798171 43807215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03874 52 524 Trihelix Transcription Factor Family AT1G70460 51.357 5.76e-150 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre16g03874 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03874 - - gmx:100805872 714.916