Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03873 ATGGCACCCTCACCCCCACATAACTCTTCACCAGATGATGCCACACCTGATAATTCTACCCCTGATGATGCTGATGGATCATCATCAAGAAATTCACATTCTTCATCACACAAAGGTTCATCATCTTCACATGGTAGCAATAAAGATGATGTTAAGGCCTTAATTGGAGCTGCTATTGGAGCTGGATTTGTTATTCTTATCTTGGTTTGTTGTTGTTGTTTAATTTGTAAGAGGAGGAAAAAGAAGGGAAAACAACAAAATTATTATTATGGTCCTGGAGAACATTCACTTGGAAAAGGGCGAGATCATTCAGGACAATGGAGCAATTATTACCACAGCGGACAACATCCTCATCCAAATTGGCAAGGAGGCCCAGGCCCAAGCCCACATGGAATGGATCATGTTGTTAGAGTCCAACAAGCACCAAATGGAAGTGGAGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGACATGAGTGCCAATTATTCATATGGAATGGGCCCACCTATGCCTCCTCCTTCACCAGGCCTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCAGCTACTAAGGGATTTGCTAATGAGAATATTATAGGACAGGGAGGTTTTGGTTATGTCCATAAGGGAATTTTGCCTAATGGAAAAGAAGTTGCTGTTAAAAGTTTAAAATCGGGTAGTGGGCAAGGCGAACGTGAGTTTCAGGCGGAGATTGATATTATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTAGCGGTGGACAAAGAATGTTGGTTTACGAGTTCGTTCCAAATAAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCAGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCCGATTTTGGATTGGCTAAGTTGACTACTGATACTAATACACATGTCTCAACTCGTGTCATGGGGACATTCGGGTACATGGCACCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCAGATGTTTTTTCATTTGGAGTAATGCTACTAGAACTGTTAACTGGTAAACGACCTTTGGATTTGACCAATGCCATGGATGAAAGCTTAGTCGATTGGGCTCGACCACTCTTGAATCAAGCACTGGAGGAGGATGGCAACTTTAGTGAATTGGTGGATCCGTTTTTGGAAGGAAACTACAATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTCGTCATTCTGCTAAGAAACGTTCAAAAATGAGTCAGATAGTAAGGGCATTAGAAGGTGATGTATCATTAGAAGACTTGAAGGAGGGGATGGTTAAATCTTCAGGGCATACTAGTGCTTATGCCTCTTCATCTGGCTCAGAATATGATACAAAACAATACAATGCAGATATGATGAAGTTCAGAATGGCAATAATGTCAAGTCAGGAATTTGGTGATAGCAGTGAGCTCCCTAGTAAGGAGATGGGTCGTCACTAG 1623 0.4165 MAPSPPHNSSPDDATPDNSTPDDADGSSSRNSHSSSHKGSSSSHGSNKDDVKALIGAAIGAGFVILILVCCCCLICKRRKKKGKQQNYYYGPGEHSLGKGRDHSGQWSNYYHSGQHPHPNWQGGPGPSPHGMDHVVRVQQAPNGSGVWGAPHPLMNSGDMSANYSYGMGPPMPPPSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLNQALEEDGNFSELVDPFLEGNYNHQEMIRLAACAASSIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMVKSSGHTSAYASSSGSEYDTKQYNADMMKFRMAIMSSQEFGDSSELPSKEMGRH 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03873 540 ProSiteProfiles Protein kinase domain profile. 200 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03873 540 Gene3D Transferase(Phosphotransferase) domain 1 276 490 - -
Trre16g03873 540 MobiDBLite consensus disorder prediction 1 48 - -
Trre16g03873 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Trre16g03873 540 MobiDBLite consensus disorder prediction 11 48 - -
Trre16g03873 540 Pfam Protein tyrosine and serine/threonine kinase 203 402 IPR001245 GO:0004672|GO:0006468
Trre16g03873 540 SUPERFAMILY Protein kinase-like (PK-like) 176 473 IPR011009 -
Trre16g03873 540 FunFam proline-rich receptor-like protein kinase PERK1 178 275 - -
Trre16g03873 540 SMART serkin_6 200 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03873 540 FunFam Proline-rich receptor-like protein kinase PERK1 276 484 - -
Trre16g03873 540 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 61 519 IPR047117 -
Trre16g03873 540 ProSitePatterns Protein kinases ATP-binding region signature. 206 228 IPR017441 GO:0005524
Trre16g03873 540 Gene3D Phosphorylase Kinase; domain 1 180 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03873 Trre-Chr16 43798171 43807215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03873 52 531 Trihelix Transcription Factor Family AT1G70460 50.617 8.75e-149 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre16g03873 PK_Tyr_Ser-Thr 4.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03873 - - gmx:100805872 708.753