Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03872 ATGGCACCCTCACCCCCACATAACTCTTCACCAGATGATGCCACACCTGATAATTCTACCCCTGATGATGCTGATGGATCATCATCAAGAAATTCACATTCTTCATCACACAAAGGTTCATCATCTTCACATGGTAGCAATAAAGATGATGTTAAGGCCTTAATTGGAGCTGCTATTGGAGCTGGATTTGTTATTCTTATCTTGGTTTGTTGTTGTTGTTTAATTTGTAAGAGGAGGAAAAAGAAGGGAAAACAACAAAATTATTATTATGGTCCTGGAGAACATTCACTTGGAAAAGACTACTTATTTCGTACTTCAGGGCGAGATCATTCAGGACAATGGAGCAATTATTACCACAGCGGACAACATCCTCATCCAAATTGGCAAGGAGGCCCAGGCCCAAGCCCACATGGAATGGATCATGTTGTTAGAGTCCAACAAGCACCAAATGGAAGTGGAGTTTGGGGTGCACCACACCCTTTAATGAATAGTGGTGACATGAGTGCCAATTATTCATATGGAATGGGCCCACCTATGCCTCCTCCTTCACCAGGCCTATCTCTTACTCTCAAGGGTGGTACCTTCACTTATGAGGAATTGGCATCAGCTACTAAGGGATTTGCTAATGAGAATATTATAGGACAGGGAGGTTTTGGTTATGTCCATAAGGGAATTTTGCCTAATGGAAAAGAAGTTGCTGTTAAAAGTTTAAAATCGGGTAGTGGGCAAGGCGAACGTGAGTTTCAGGCGGAGATTGATATTATTAGTCGTGTTCATCATCGTCATCTTGTGTCGCTTGTTGGATATTGTGTTAGCGGTGGACAAAGAATGTTGGTTTACGAGTTCGTTCCAAATAAAACTTTGGAACATCACCTTCATGGAAAGGGTGTGCCTACCATGGATTGGCCTACTAGAATGAAAATTGCACTAGGATCAGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTAGTCCTCGCATTATCCATCGTGATATTAAGGCTGCTAATGTTCTAATTGATGATAGCTTTGAAGCTAAGGTGGCCGATTTTGGATTGGCTAAGTTGACTACTGATACTAATACACATGTCTCAACTCGTGTCATGGGGACATTCGGGTACATGGCACCAGAATATGCATCAAGTGGAAAATTGACAGAGAAATCAGATGTTTTTTCATTTGGAGTAATGCTACTAGAACTGTTAACTGGTAAACGACCTTTGGATTTGACCAATGCCATGGATGAAAGCTTAGTCGATTGGGCTCGACCACTCTTGAATCAAGCACTGGAGGAGGATGGCAACTTTAGTGAATTGGTGGATCCGTTTTTGGAAGGAAACTACAATCATCAAGAAATGATAAGATTGGCAGCTTGTGCTGCTAGTAGCATTCGTCATTCTGCTAAGAAACGTTCAAAAATGAGTCAGATAGTAAGGGCATTAGAAGGTGATGTATCATTAGAAGACTTGAAGGAGGGGATGGTTAAATCTTCAGGGCATACTAGTGCTTATGCCTCTTCATCTGGCTCAGAATATGATACAAAACAATACAATGCAGATATGATGAAGTTCAGAATGGCAATAATGTCAAGTCAGGAATTTGGTGATAGCAGTGAGCTCCCTAGTAAGGAGATGGGTCGTCACTAG 1644 0.4155 MAPSPPHNSSPDDATPDNSTPDDADGSSSRNSHSSSHKGSSSSHGSNKDDVKALIGAAIGAGFVILILVCCCCLICKRRKKKGKQQNYYYGPGEHSLGKDYLFRTSGRDHSGQWSNYYHSGQHPHPNWQGGPGPSPHGMDHVVRVQQAPNGSGVWGAPHPLMNSGDMSANYSYGMGPPMPPPSPGLSLTLKGGTFTYEELASATKGFANENIIGQGGFGYVHKGILPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYCVSGGQRMLVYEFVPNKTLEHHLHGKGVPTMDWPTRMKIALGSAKGLAYLHEDCSPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELLTGKRPLDLTNAMDESLVDWARPLLNQALEEDGNFSELVDPFLEGNYNHQEMIRLAACAASSIRHSAKKRSKMSQIVRALEGDVSLEDLKEGMVKSSGHTSAYASSSGSEYDTKQYNADMMKFRMAIMSSQEFGDSSELPSKEMGRH 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03872 547 SUPERFAMILY Protein kinase-like (PK-like) 183 480 IPR011009 -
Trre16g03872 547 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Trre16g03872 547 SMART serkin_6 207 443 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03872 547 MobiDBLite consensus disorder prediction 1 48 - -
Trre16g03872 547 Pfam Protein tyrosine and serine/threonine kinase 210 409 IPR001245 GO:0004672|GO:0006468
Trre16g03872 547 Gene3D Transferase(Phosphotransferase) domain 1 283 497 - -
Trre16g03872 547 MobiDBLite consensus disorder prediction 11 48 - -
Trre16g03872 547 FunFam proline-rich receptor-like protein kinase PERK1 185 282 - -
Trre16g03872 547 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 61 526 IPR047117 -
Trre16g03872 547 ProSiteProfiles Protein kinase domain profile. 207 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03872 547 FunFam Proline-rich receptor-like protein kinase PERK1 283 491 - -
Trre16g03872 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 327 339 IPR008271 GO:0004672|GO:0006468
Trre16g03872 547 Gene3D Phosphorylase Kinase; domain 1 187 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03872 Trre-Chr16 43798171 43807215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03872 52 538 Trihelix Transcription Factor Family AT1G70460 50.000 2.36e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre16g03872 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03872 - - gmx:100805872 706.057