Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03864 ATGGTTGATTTAGACAATGTTTCAACAGCTTCAGGAGAAGCTAGCATCTCTTCATCTGGTAATAACAATAATCAAACCCCAAAACCCACCAAGAAAAAAAGAAATCTTCCAGGAATGCCAGATCCAGAAGCAGAGGTGATAGCTTTATCACCAACAACTTTATTAGCAACAAATAGATTTGTATGTGAAATATGTAACAAAGGTTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACATAATCTACCATGGAAACTGAGACAAAGATCAACTAAAGAAGTTAGAAAAAGGGTTTATGTTTGTCCTGAATCAACTTGTGTTCATCATGATCCTTCTAGAGCTTTAGGTGATTTAACTGGTATTAAAAAGCACTTTTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGATAAATGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCACTCTAAAGTTTGTGGTTCTAGAGAGTATAAATGTGATTGTGGAACTGTTTTTTCCAGGAGGGATAGTTTTATCACACATAGAGCTTTTTGTGATGCTTTGGCTGAGGAGAATGCTAAATCTCAGAATCAAGTTGTTGGGAAAGCTAATTCAGAATCTGATTCAAAGGTTTTGACTGGTGATTCATTGCCGCCGGTGCCGACGTCGACGCCGGCTGCTATAACAACTCCTCAGTCAAATAGTGGTGTGTCCTCTGCTTTGGAGAATCAGAAGCTAGATTTGCCAGAAAATCCGCCGCAAATCGTAGAGGAGCCAGAAGCTATTGTTACTACTACTACTGCTGCTGCTGCTGTTTTAAATGCGAATTGTAGTAGTAGCAGCACTAGCTCGACGAGTAATGGTTGTGCTGCTACTAGCAGTGGCGTGTTTGCAAGTTTGTTTGCTTCATCATCAGCTTCGGCTTCTGCAAGTATGCAATCTCATACACCAGTGTTCTCTGACTTAATTAGGTCCATGGGATGTCCAGATCGTTCGACAGATTTCTCAGCTCCTCCATCGTCCGAGGCTATTTCTCTTTGTCTCTCGACCAATCCTGGATCGTCAATTTTCGGAACAGGAGGGCAGGAGTGTCGTCAATATGTGCCGACACATCAGCCGCCAGCAATGTCTGCCACTGCATTACTGCAGAAAGCTGCTCAAATGGGAGCTGCCGCTACTAATGCATCTTTGCTTCGCGGACTTGGAATCGTGTCGTCTTCTGCTTCCACTTCATCAGGTCAGCAAGATAGCCTACACTGGGGTCTCGGACAAGTGGAACCGGAGGGTTCTGGTTTAGGTCCAGCAGGACTTGGACTCGGACTTCCTTGTGACGGTGATTCAGGACTAAAGGAATTAATGTTGGGAACTCCATCAATGTTTGGTCCTAAGCAGACAACTCTTGATTTTCTAGGATTAGGTATGGCTGCTGGCGGCAGTGCTGGCGGAGGCTTGTCAGCACTTATCACATCAATCGGCGGCAGTGGCGGTTTGGATGTTACCGCAGCAACTGCATCCTTCCGTAACGGAGAGTTTTCTGGCAAAGATATTGGAAGGAATTCATGA 1560 0.4359 MVDLDNVSTASGEASISSSGNNNNQTPKPTKKKRNLPGMPDPEAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSTKEVRKRVYVCPESTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKVCGSREYKCDCGTVFSRRDSFITHRAFCDALAEENAKSQNQVVGKANSESDSKVLTGDSLPPVPTSTPAAITTPQSNSGVSSALENQKLDLPENPPQIVEEPEAIVTTTTAAAAVLNANCSSSSTSSTSNGCAATSSGVFASLFASSSASASASMQSHTPVFSDLIRSMGCPDRSTDFSAPPSSEAISLCLSTNPGSSIFGTGGQECRQYVPTHQPPAMSATALLQKAAQMGAAATNASLLRGLGIVSSSASTSSGQQDSLHWGLGQVEPEGSGLGPAGLGLGLPCDGDSGLKELMLGTPSMFGPKQTTLDFLGLGMAAGGSAGGGLSALITSIGGSGGLDVTAATASFRNGEFSGKDIGRNS 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03864 519 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Trre16g03864 519 Gene3D Classic Zinc Finger 40 110 - -
Trre16g03864 519 MobiDBLite consensus disorder prediction 8 31 - -
Trre16g03864 519 SMART c2h2final6 60 82 IPR013087 -
Trre16g03864 519 SMART c2h2final6 101 131 IPR013087 -
Trre16g03864 519 SMART c2h2final6 136 156 IPR013087 -
Trre16g03864 519 Pfam Zinc finger, C2H2 type 60 82 IPR013087 -
Trre16g03864 519 MobiDBLite consensus disorder prediction 195 238 - -
Trre16g03864 519 MobiDBLite consensus disorder prediction 1 43 - -
Trre16g03864 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Trre16g03864 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 477 IPR031140 -
Trre16g03864 519 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Trre16g03864 519 Gene3D Classic Zinc Finger 129 198 - -
Trre16g03864 519 FunFam protein indeterminate-domain 12-like 39 107 - -
Trre16g03864 519 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03864 Trre-Chr16 43728868 43731181 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03864 2 519 IDZ Gene Family AT5G66730 58.076 2.81e-177 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g03864 zf-C2H2 0.0053 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03864 K25869 - gmx:100806404 678.322