Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03863 ATGGGTGCCATACGAGTCGTCTCCACGGATACGATCAAGGCACCAAAATCAAGCGATTATGAAATAGATTTGACTCCATGGGATCTTCGGTTTCTATTTGCTTCAACCAACAAAAAGGGTCTTCTTTATCACCATCAGGTAGTGGCCAACCAAATCGAACGGCTAAGACACTCTTTATCCTCTGCTCTTGCTGTTTTCCAACCTGTTGCTGGCCGTCTCAAAATAACGGAACACGAAAACAACATGGTCTCGTGTTCCGTAACATGCAACAATGCAGGTGTGCTCTTTATCCATGCGATAGCAGAGAATACTTGTGTTGCTGACATTGTAGGACCCACATACGTTCCTCCAATTGTCGATTCATTTTTTGCTTTCATCGGAGATAGAAACTACGAAGGCACGTCAAAACCATTGTTAGGAGTTCAAGTTACAGAGCTAGTTGACGGCGTCTTCATTGGTTGCACATTCAACCATGCTGTTGTTGACGGGAAGTCAATGTGGCATTTCATTAATTCATGGGCTGAAATTTCACGCAATTGTTGTCATCACCAAATATGCAAACTCCCAACACTCGAGCGTTGGTTTCCAAATGGTATTCAACGTCCCATACAATTTCCTTTCACTATGGAGGTGCAAAAGAATCACTTTGATTTATCAGAGAGGGTATTCCACTTCACAAAGGAGAAAATCATGCAACTGAAATCAAAAGTCAACGCAGAGACCGGTACCATCAAAATATCTTCCCTTCAAGCACTTTTAACTCACCTTTGGTGCTCCGTGATCCGTTCCAAGCAATTTGAACCTCAAGAAGAAGTCCATAATAGGTTTATGATCGGAGTTAGACCGAGATTTGTTCCACCATTGCCAGAAGATTATTTTGGAAACGCAATTATAAGTTGCGTGGTTAAAATGAAAGCCGGAGAGTTGTTGGAGGAAGGTGGACTTTGTAAAGGCGCTTGCGAGATGAACAAGTTAATTGCTTCATATTCTGATGAGAAGTTGAAGAATCAATACGAGTCTTGGTTAAGAAATCCAACGTTTGTTAGGCAAGTTAGCACGACCGATAATAATTTCTTACTCATCATTACTAGTTCTCCTTTGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTGGCAGTTCGTAGTGCATATAAAATTAATGGATTTGTTAGTGTCTTTGCTGGAAGAGAAGAAGGCAGTATTGACCTTCAAGTATGCCTTCCTTACAAGATTTTGGAGGCAATGGGAAATGACCTTCAATTCATGGATGTTGTGTCCAACTAA 1293 0.4114 MGAIRVVSTDTIKAPKSSDYEIDLTPWDLRFLFASTNKKGLLYHHQVVANQIERLRHSLSSALAVFQPVAGRLKITEHENNMVSCSVTCNNAGVLFIHAIAENTCVADIVGPTYVPPIVDSFFAFIGDRNYEGTSKPLLGVQVTELVDGVFIGCTFNHAVVDGKSMWHFINSWAEISRNCCHHQICKLPTLERWFPNGIQRPIQFPFTMEVQKNHFDLSERVFHFTKEKIMQLKSKVNAETGTIKISSLQALLTHLWCSVIRSKQFEPQEEVHNRFMIGVRPRFVPPLPEDYFGNAIISCVVKMKAGELLEEGGLCKGACEMNKLIASYSDEKLKNQYESWLRNPTFVRQVSTTDNNFLLIITSSPLFDVYGNDFGWGKPVAVRSAYKINGFVSVFAGREEGSIDLQVCLPYKILEAMGNDLQFMDVVSN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03863 430 Gene3D - 2 205 IPR023213 -
Trre16g03863 430 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 425 - -
Trre16g03863 430 Gene3D - 208 420 IPR023213 -
Trre16g03863 430 Pfam Transferase family 6 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03863 Trre-Chr16 43716616 43717908 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03863 55 381 Monolignol Biosynthesis Gene Families AT5G48930 28.035 1.34e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03863 - - gmx:100500257 476.092