Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03862 ATGGGTGCCATACGAGTCGTCTCCACGGATACGATCAAGGCACCAAAATCAAGCGATCATGAAATAGATTTGACTCCATGGGATCTTCGGTTTCTACTTGCTTCAACCAACAAAAAGGGTCTTCTTTATCACCATCAGGTAGTGGCCAACCAAATCGAACGGCTAAGACACTCTTTATCCTCTGCTCTTGCTGTTTTCCAACCTGTTGCTGGCCGTCTCAAAATAACGGAACACGAAAACAACATGGTCTCGTGTTCCGTAACATGCAACAATGCAGGACCCACATACGTTCCTCCAATTGTCGATTCATTTTTTGCTTTCATCGGAGATAGAAACTACGAAGGCACGTCAAAACCATTGTTGGGAGTTCAAGTTACAGAGCTAGTTGACGGCGTCTTCATTGGTTGCACATTCAACCATGCTGCTGTTGACGGGAAGTCAATGTGGCATTTCATTAATTTATGGGCTGAAATTTCACGCAATTGTTGTCATCACCAAATATGCAAACTCCCAACACTCAAGCGTTGGTTTCCAAATGGTATTCAACGTCCCATACAATTTCCTTTCACTATGGAGGTGCAAAAGAATCACTTTGATTTATCAGAGAGGGTATTCCACTTCACAAAGGAGAAAATCATGCAACTGAAATCAAAAGTCAACGCAGAGACCGGTACCATCAAAATATCTTCCCTACAAGCACTTTTAACTCACCTTTGGTGCTCCGTGATCCGTTCCAAGCAATTTGACCCTCAAGAAGAAGTCCATAATATATTTATGATTGGAGTTAGACCGAGATTTGTTCCACCATTGCCAGAAGATTATTTTGGAAACACAATTATAAGTTGTGTGGTTAAAATGAAAGCCGGAGAGTTGTTGGAGGAAGGTGGACTTTGTAAAGGCGCCACCGAGATGAACAAGTTAATTGCTTCATATTCTGATGAGAAGTTGAAGAATCAATACGAGTCTTGGTTAAGAAATCCAACCTTTGTTAGGCAAGTTAGCACGACCGATAGTAATTTCTTACTCATCATTAGTAGTTCTCCTTTGTTTGATGTTTATGGTAATGATTTTGGATGGGGAAAGCCTGTGGCAGTTCGTAGTGCATATAAAACTAATGGATTTGTTAGTGTCTTTGCTGGAAGAGAAGAAGGCAGTATTGACCTTCAAGTATGCCTTCCTTACAAGATTTTGGAGGCAATGGGAAATGACCTTCAATTCATGGATGTTGTGTCCAACTAA 1239 0.4116 MGAIRVVSTDTIKAPKSSDHEIDLTPWDLRFLLASTNKKGLLYHHQVVANQIERLRHSLSSALAVFQPVAGRLKITEHENNMVSCSVTCNNAGPTYVPPIVDSFFAFIGDRNYEGTSKPLLGVQVTELVDGVFIGCTFNHAAVDGKSMWHFINLWAEISRNCCHHQICKLPTLKRWFPNGIQRPIQFPFTMEVQKNHFDLSERVFHFTKEKIMQLKSKVNAETGTIKISSLQALLTHLWCSVIRSKQFDPQEEVHNIFMIGVRPRFVPPLPEDYFGNTIISCVVKMKAGELLEEGGLCKGATEMNKLIASYSDEKLKNQYESWLRNPTFVRQVSTTDSNFLLIISSSPLFDVYGNDFGWGKPVAVRSAYKTNGFVSVFAGREEGSIDLQVCLPYKILEAMGNDLQFMDVVSN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03862 412 Gene3D - 2 186 IPR023213 -
Trre16g03862 412 Pfam Transferase family 6 404 - -
Trre16g03862 412 Gene3D - 190 402 IPR023213 -
Trre16g03862 412 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 6 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03862 Trre-Chr16 43710156 43711452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03862 55 392 Monolignol Biosynthesis Gene Families AT5G48930 27.078 4.14e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03862 - - gmx:100500257 438.728