Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03860 ATGAGAGTTCCTCCTCCTGCGGCTTCTTCATCTTCATCAACATCTTCACCGCAACAACCGAAACTTACAACCCAAAACATCCTTGTTCCCACTCCCAATAACCCGTCAACATCAACAACCACCACCACCACTGCCACCTTGTGCTACGAACCTCGGTCCGTCCTCGAGCTTTGTCGTAGTCCTAGCCCAGAAAAGAAACCAACCCAACAAGAACAATCGCAACAACAACATAATAATAATCACGAAGTGGAAGAAGAAGAAGATCATGCTTCCTTGCCTAATTTGGATTGGTGGGATTCCATCATGAAAGATTTGGGTTTACAAGACGACTCTTCAAATCCCATAATACCTCTTTTGAAAAATACCAATAATACCCCTGAAATTTACCCTAACCCTTCTCAAGACCAATTTGATCACACTCAAGATTTCACTTCTCTCTCAGATATTTACTCTAATAATCAAAACCTGGCCTATAATTACCCTAACACAAACACTAATCTGGATCATTTGGTTCATGACTTCAACAATAACAATAATCAACAACCAAATAGCAACAGTAATTGGGATTTCATTGAAGAACTTATTCGCGCCGCGGATTGCTTCGATAACAATCAACTTCAATTCGCTCAAGTAATACTAGAGCGGCTCAATCAACGGTTAAGATCGCCTACTGGTAAGCCGCTACACCGAGCGGCTTTTCATTTCAAAGATGCTCTTCAATCTCTTCTTTCCGGTTCAAACCGGACTAATCCGCCTCGTCTTTCATCCATGGTGGAGATTGTGCAAACCATAAGAACGTTTAAGGCCTTTTCTGGAATTTCACCGATTCCAATGTTTTCAATTTTCACCACAAATCAAGCGTTACTCGAAGCTCTTCATGGATCGTTATTCATGCACGTTGTTGATTTTGAAATTGGACTTGGAATTCAATACGCTTCTCTTATGAAAGAGATTGCTGAAAAAGCTGTTAACGGTTCGCCGTTACTTCGTATCACCGCCGTCGTGCCGGAGGAGTATGCCGTTGAAAGTAGGCTTATTCGTGAGAATCTGAATCAGTTTGCGCATGATCTTGGGATTCGTGTACAGGTTGATTTTGTGCCGTTAAGGACTTTTGAAACGGTGTCGTTTAAGGCTGTGAGATTTGTTGACGGTGAGAAGACTGCGATTCTGTTAACGCCAGCGATTTTCTGTCGCCTTGGATCCGACGGTACTACCGCGTTTCTTTCCGATGTTCGGAGAATAACTCCTGGTGTGGTGGTTTTTGTTGACGGTGAAGGATGGACGGAGGCGGCTTCGGCGGCGTCATTTCGCCGTGGAGTTGTGAATAGCTTGGAGTTTTATTCTATGATGCTGGAGTCGTTGGATGCGTCGGTGGCGGCCGGAGGTGGAGGAGAGTGGGCGAGGAGGATCGAGATGCTTCTGCTTCGGCCGAAGATTATTTCGGCGGTGGAAGCTGCTGGAAGAAGAACGACGCCGTGGAGAGAGGCGTTTTATGGCGCCGGAATGAGGCCGGTGCAGTTGAGTCAGTTTGCGGATTTTCAGGCAGAGTGTTTGTTAGCGAAGGTGCAAATCAGAGGCTTCCACGTGGCGAAACGACAGGCTGAGTTGGTGCTTTTTTGGCATGAGAGGGCCATGGTTGCCACGTCAGCTTGGCGATGTTAG 1662 0.4591 MRVPPPAASSSSSTSSPQQPKLTTQNILVPTPNNPSTSTTTTTTATLCYEPRSVLELCRSPSPEKKPTQQEQSQQQHNNNHEVEEEEDHASLPNLDWWDSIMKDLGLQDDSSNPIIPLLKNTNNTPEIYPNPSQDQFDHTQDFTSLSDIYSNNQNLAYNYPNTNTNLDHLVHDFNNNNNQQPNSNSNWDFIEELIRAADCFDNNQLQFAQVILERLNQRLRSPTGKPLHRAAFHFKDALQSLLSGSNRTNPPRLSSMVEIVQTIRTFKAFSGISPIPMFSIFTTNQALLEALHGSLFMHVVDFEIGLGIQYASLMKEIAEKAVNGSPLLRITAVVPEEYAVESRLIRENLNQFAHDLGIRVQVDFVPLRTFETVSFKAVRFVDGEKTAILLTPAIFCRLGSDGTTAFLSDVRRITPGVVVFVDGEGWTEAASAASFRRGVVNSLEFYSMMLESLDASVAAGGGGEWARRIEMLLLRPKIISAVEAAGRRTTPWREAFYGAGMRPVQLSQFADFQAECLLAKVQIRGFHVAKRQAELVLFWHERAMVATSAWRC 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03860 553 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 159 547 IPR005202 -
Trre16g03860 553 Pfam GRAS domain family 191 552 IPR005202 -
Trre16g03860 553 ProSiteProfiles GRAS family profile. 181 552 IPR005202 -
Trre16g03860 553 MobiDBLite consensus disorder prediction 1 49 - -
Trre16g03860 553 MobiDBLite consensus disorder prediction 63 77 - -
Trre16g03860 553 MobiDBLite consensus disorder prediction 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03860 Trre-Chr16 43673163 43674824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03860 88 552 GRAS Transcription Factor Family AT4G36710 55.236 1.70e-168 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre16g03860 GRAS 2.9e-85 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03860 - - cam:101510420 910.598