Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03859 ATGGGGACTAAGGAGGACAGCACAACTAAACCTTCTAAATCATCTACATCAACTCAGGAGGTACCAACAGTACCACCACCATATCCAGATTGGTCAAGCTCCATGCAGGCCTACTATAATCCTGGAGCCGCTCCGCCTCCCTATTTTGCCTCAACTGTTGCTCCACCAAACCCCCATCCGTATATGTGGGGAGGTCAGCATCCTATGATGGCGCCATATGGGACTCCAGTCCCGTATCCTGCTATGTACCCTCCTGGAAATATCTACGCTCATCCTAGCATGGTAGTGACTCCAAGTGCTATGCACCAAACTACAGAGTTTGAAGGCAAGGGAACTGACGGAAAGGAAAAGGATTCATCTAAAAAATCGAAGGGTACTTCTGCGAATACATGTGCCAAAGCAGGAGAGAGTGGAAAGGCAGGCTCAGGTTCAGGCAATGATGGTTTTTCACAAAGTGGTGAAAGCGGTTCAGAGGGTTCATCAAATGGTAGTGATGAGAACCAACAGGAATCAGCTAGAAACAAGAAGGGAGGGTTTGACCTCATGCTTGTTAATGGAGCCAACGTACAGAACAATACCACTGGACCCATTTCTCAATCGCCTGTTCCCGGAAATCCTGTTGTCTCGATGCCTGCTACTAATCTTAATATCGGAATGGATTTATGGAATGCATCTCCTGCTAGTGCTGAAGCCTCCAAAATGAGACACAATCAATCTAGTGCCCCTGGAGCTGGTGAACAATGGATGCAACAAGATGACCGTGAGCTGAAAAGACAGAAGAGAAAACAGTCTAACCGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGCTACAAAAGAGGGTGGAGGCGCTGGGAGGTGAGAATCGAACTCTCAGAGAAGAGCTTCAGAAACTTTCCGAGGAATGTGAGAAGCTTACATCTGAAAACAGCTCTATCAAGGAGGAGTTGGAACGATTGTGTGGGCCGGAAGTAGTTGCTAACCTTGAATGA 1008 0.4762 MGTKEDSTTKPSKSSTSTQEVPTVPPPYPDWSSSMQAYYNPGAAPPPYFASTVAPPNPHPYMWGGQHPMMAPYGTPVPYPAMYPPGNIYAHPSMVVTPSAMHQTTEFEGKGTDGKEKDSSKKSKGTSANTCAKAGESGKAGSGSGNDGFSQSGESGSEGSSNGSDENQQESARNKKGGFDLMLVNGANVQNNTTGPISQSPVPGNPVVSMPATNLNIGMDLWNASPASAEASKMRHNQSSAPGAGEQWMQQDDRELKRQKRKQSNRESARRSRLRKQAECEELQKRVEALGGENRTLREELQKLSEECEKLTSENSSIKEELERLCGPEVVANLE 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03859 335 MobiDBLite consensus disorder prediction 104 208 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 230 246 - -
Trre16g03859 335 Pfam Disordered region downstream of MFMR 116 228 - -
Trre16g03859 335 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 260 275 IPR004827 GO:0003700|GO:0006355
Trre16g03859 335 MobiDBLite consensus disorder prediction 185 208 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 312 326 - -
Trre16g03859 335 Gene3D - 256 310 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 143 168 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 108 123 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 1 21 - -
Trre16g03859 335 SUPERFAMILY Leucine zipper domain 256 312 IPR046347 GO:0003700|GO:0006355
Trre16g03859 335 MobiDBLite consensus disorder prediction 312 335 - -
Trre16g03859 335 FunFam BZIP transcription factor 255 306 - -
Trre16g03859 335 Pfam bZIP transcription factor 254 315 IPR004827 GO:0003700|GO:0006355
Trre16g03859 335 Coils Coil 266 321 - -
Trre16g03859 335 CDD bZIP_plant_GBF1 258 308 IPR045314 GO:0003700|GO:0006355
Trre16g03859 335 Pfam G-box binding protein MFMR 1 94 IPR012900 -
Trre16g03859 335 SMART brlzneu 253 317 IPR004827 GO:0003700|GO:0006355
Trre16g03859 335 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 330 IPR044827 GO:0003700|GO:0006355|GO:0043565
Trre16g03859 335 MobiDBLite consensus disorder prediction 227 278 - -
Trre16g03859 335 MobiDBLite consensus disorder prediction 1 30 - -
Trre16g03859 335 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 255 318 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03859 Trre-Chr16 43668238 43671192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03859 1 335 bZIP Transcription Factor Family AT4G36730 53.412 1.12e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre16g03859 MFMR_assoc 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03859 K09060 - gmx:778191 490.73