Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03858 ATGTTTTATAACCATGTCGTATTCTATAATGAAGGTGTTTATTCTGCTGTCATTTTAGGAAAGGGGCACATAACAAAGATGAAGACTCCAAGCAAGAAAAACAAAAGAACTGAAGACAAAGAGGGTGAAACCAACGTAGGTGATTCATATATGTCTGAAAGCAATGCTGTTGATGATTTGCCTTTGGCCAAAAGTAATGATGATCAACATTTGGTTGAAAGCAATAAAAGTGAAGATGGCGAGCAGGGCAAGAAGAAAAATAAAAAGAAGAAACTGAGTGAAGAAAACAAAGATAAGGAGTACAAAAGCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATAAAAAAGAAGCAGGTGCTAATTGAAGGAAACACTCCGAAGGAGTGTAATGACTTCAGGAGCAATGTAGATGAAGATGGCAAGCAAGACAAAAAGGTGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAAACATAAAGAGTTTGAAACCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAGAAGCAGAAGCTAATTGAAGGAAACAACCTAGAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGATGGCACGCAAGACAAAAAGATGAAGAAAAAGAAGAAGAAACTAAGTGAAGAAAGCAAACATAAGAAGTTTGAAAGCAATGAATGTGAAGATGATAACCAAGGAAAGAAGATGAAAAAGAAGCAGAAGCTAATTGAAGAAAACACACTAGAGGAGTGTAATGACTTTAGAAGCAATGGAGATGAAGTTGGCATGCAAGACAAAAAGATGAAGAAAAAGAAGAAACTAGGTGAAGAAAGCAACCATAAGGATTATAACGAGCGCAATAGCAATGAATGTGATGATGATAACCAAGGAAAGAAGATGAAAAAAAAGCAGAAGCTAATTGAAGGAAACACACTGAAGGAGTGTAGTGACTTTAGAAGCAATGAAGGTGAAGATGGTGAGCAAGACAAGAAGATGAACAAAAAGAAGAAGAAACTAAGTGAAGAAAATAAACATAAGGAGTGTAATGAGTTCAAAAGCAATGAATGCGAAGATGACCAAGGGAAGAAGATGAAAAAGAAGCGGAAACTAATGGAAGGAAACACAGTTAATGAGCGTAATGACTTTATAAGCAATGGATGTGAAGATGGTGAGCAAGACAAGAAGATGAAGAAAAAGAAAAAGAAAAAGAAACTAAGTGATAAAGTGAAACCCAAACGAGTAACTTTTTCTGATGAAGTAGAGACGTTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTTTACACCCGAAGAAGATGAGAAGCTCAAAGCATCTGTTTTTGCCTATATAGATTCTCATGGTCTGGGTGAAGAAGGTCTAGATAAGATTCTTCATGTCAGATCACACCCTGAGCTTATAGGCTGTTGGAAAGAAATTGCACGAGTTCTACCTCATAGGCCCACCTATAGTGTGTCTAAACGTGCTCATACTTTGTTGGAAAATGTTGGGAGGTGTAAGTGGACACCTGAGGAGCTTGACTTTATACGGAAGTCTTACGAGCAACATGGACCTGATTTCAGGCTAATAGCCGATACTTTGGGTAAAAGTCGAGATCAGGTAAAAGATGCGTGGCGTAGATTAAAATATAAGAAAGCAAGATTTGGACATTGGTCCCAAGAGGAGTATCAAACTTTGTATAATTTAGTAAACGAGGATCTGCGCGCAAGGTCTTTAGAGCCTTATAGAAAAGCACAACATGGTATGTTGCGAGATAATATTTGTTGGGAGGCAATTGGTCACAAATTGGAAACCCGAAACAGTGCATTTTGCTGCAAGAAGTGGTATGAGGAATTAACATCACCAATGGTTGCTAGAGGTGATTGGTGTGATACAGACGACTTCCGCTTGATAGATGCTTTATATACTTTGGATGCTTGCTGCATGGAGGAGGTAGATTGGGACGAGCTACTTGAGCATAGGTCTGGTGATGCATGCAGAAAACGATGGGATCAAATGGTCCAACATCTTGGGGAGCATGCAAGGAAGCCGTTTATTGAGCAGGTTGAAGTTCTCACAAAGAGATTCTGCCCTGACTTGTTGGAAGCAAGAGAAGCCTTTGACAACAAACCTGTCATTTGTTGA 2151 0.3845 MFYNHVVFYNEGVYSAVILGKGHITKMKTPSKKNKRTEDKEGETNVGDSYMSESNAVDDLPLAKSNDDQHLVESNKSEDGEQGKKKNKKKKLSEENKDKEYKSNECEDDNQGKKIKKKQVLIEGNTPKECNDFRSNVDEDGKQDKKVKKKKKKLSEESKHKEFETNECEDDNQGKKMKKKQKLIEGNNLEECNDFRSNGDEDGTQDKKMKKKKKKLSEESKHKKFESNECEDDNQGKKMKKKQKLIEENTLEECNDFRSNGDEVGMQDKKMKKKKKLGEESNHKDYNERNSNECDDDNQGKKMKKKQKLIEGNTLKECSDFRSNEGEDGEQDKKMNKKKKKLSEENKHKECNEFKSNECEDDQGKKMKKKRKLMEGNTVNERNDFISNGCEDGEQDKKMKKKKKKKKLSDKVKPKRVTFSDEVETFCCDGLVRGKRFTPEEDEKLKASVFAYIDSHGLGEEGLDKILHVRSHPELIGCWKEIARVLPHRPTYSVSKRAHTLLENVGRCKWTPEELDFIRKSYEQHGPDFRLIADTLGKSRDQVKDAWRRLKYKKARFGHWSQEEYQTLYNLVNEDLRARSLEPYRKAQHGMLRDNICWEAIGHKLETRNSAFCCKKWYEELTSPMVARGDWCDTDDFRLIDALYTLDACCMEEVDWDELLEHRSGDACRKRWDQMVQHLGEHARKPFIEQVEVLTKRFCPDLLEAREAFDNKPVIC 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03858 716 MobiDBLite consensus disorder prediction 31 46 - -
Trre16g03858 716 Pfam Myb-like DNA-binding domain 510 568 - -
Trre16g03858 716 Coils Coil 89 109 - -
Trre16g03858 716 MobiDBLite consensus disorder prediction 156 208 - -
Trre16g03858 716 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 502 555 IPR017930 -
Trre16g03858 716 Gene3D - 511 550 - -
Trre16g03858 716 ProSiteProfiles Myb-like domain profile. 623 676 IPR001005 -
Trre16g03858 716 SUPERFAMILY Homeodomain-like 482 564 IPR009057 -
Trre16g03858 716 SMART sant 556 623 IPR001005 -
Trre16g03858 716 SMART sant 433 504 IPR001005 -
Trre16g03858 716 SMART sant 506 553 IPR001005 -
Trre16g03858 716 Gene3D - 551 625 - -
Trre16g03858 716 MobiDBLite consensus disorder prediction 384 412 - -
Trre16g03858 716 ProSiteProfiles Myb-like domain profile. 502 551 IPR001005 -
Trre16g03858 716 MobiDBLite consensus disorder prediction 219 348 - -
Trre16g03858 716 CDD SANT 509 551 IPR001005 -
Trre16g03858 716 PANTHER GB|AAC33480.1 55 715 - -
Trre16g03858 716 MobiDBLite consensus disorder prediction 63 123 - -
Trre16g03858 716 MobiDBLite consensus disorder prediction 27 348 - -
Trre16g03858 716 ProSiteProfiles Myb-like domain profile. 552 621 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03858 Trre-Chr16 43636935 43639085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03858 479 685 MYB-Related Transcription Factor Family AT3G18100 24.424 4.68e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre16g03858 Myb_DNA-bind_6 1.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03858 - - mtr:112416380 811.986