Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03847 ATGCAAATGAATGTGATTGATCAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCAACAACAACTTGCCGTTTGCTCGGTAGGCTTTGCAGGAAAAATGACAAATAACATAGGTAATGACCTAATTCATTATAAAGTTACCGATCCTAGTGACAACCCTTTAAACCCAACACCTGGAACCTTGAGATATGGAGCTTCTAAAATTCAAGGTAAAGTTTGGATCACATTTCAAAAGGATATGAATATTAAGCTTGTGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTCAATGTCCACATTGCTGATAATGCGTGCTTGATGATATATAAGGCAACAAACATAATAATCCACGGGATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTCCCGATGGAAGTATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCAGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATTGCCAAGACGGTCTTCTAGATGTTACACGTGGTTCCACCAATATTACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAGGTTATGCTTCTTGGACACGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACTGTTGTATACAATTATTTTGGACCTAATTGCCACCAACGCATGCCTAGAATTCGTCATGGTTATGCACATGTTGCGAATAATTTATACATGGGATGGGTGCAATATGCAATAGGAGGAAGCATGGAACCAAGCCTTAAAAGCCAATCAAACCTTTTTATAGCGCCAACCACGGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATCGGAGACATGTGGGAATTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCTTCCTTCATGGAAACAAAAGGTGGACAGGAGAAAAAACCGAATTATAGCCCTGAACAAAATTTTGAAGTTGCTAATGCCAAATCTGTGAGATCATTGACAAGATCATCTGGTGTGTTGCAATGCAGTAAAACCTCAATATGTTGA 1065 0.3944 MQMNVIDQCWRLNPEWRKHQQQLAVCSVGFAGKMTNNIGNDLIHYKVTDPSDNPLNPTPGTLRYGASKIQGKVWITFQKDMNIKLVKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGSIMPLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPTTGNKEVTWRKSSNGIGDMWEFYSVGDAFENGASFMETKGGQEKKPNYSPEQNFEVANAKSVRSLTRSSGVLQCSKTSIC 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03847 354 Gene3D - 3 347 IPR012334 -
Trre16g03847 354 SMART amb_all 80 277 IPR002022 -
Trre16g03847 354 SUPERFAMILY Pectin lyase-like 2 348 IPR011050 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 152 173 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 294 318 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 325 348 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 26 43 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 232 251 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 254 273 IPR018082 -
Trre16g03847 354 PRINTS Pollen allergen Amb family signature 88 104 IPR018082 -
Trre16g03847 354 Pfam Pectate lyase 91 271 IPR002022 -
Trre16g03847 354 PANTHER PECTATE LYASE 18-RELATED 2 350 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03847 Trre-Chr16 43452246 43453932 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03847 34 281 Polysaccharide Lyase AT5G09280 69.355 2.10e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03847 K01728 - gmx:100811216 654.055