Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03846 ATGACTTTTAATAAACTAATCAACTCCCTCTTTTGGTGCTTTTTTTTACTTGTTGTTATGGTCACATTTTTCACTACAAATGTTAGTTCTACCAAGCAAACTAAGATAGAAGGCATGCAAATGAATGTGATTGATCAATGTTGGAGACTCAATCCTGAATGGAGGAAACATCAACAACAACTTGCCGTTTGCTCGGTAGGCTTTGCAGGAAAAATGACAAATAACATAGGTAATGACCTAATTCATTATAAAGTTACCGATCCTAGTGACAACCCTTTAAACCCAACACCTGGAACCTTGAGATATGGAGCTTCTAAAATTCAAGGTAAAGTTTGGATCACATTTCAAAAGGATATGAATATTAAGCTTGTGAAACCCCTTCTCATTAGTAGTTTCACCACCATTGATGGTCGAGGTGTCAATGTCCACATTGCTGATAATGCGTGCTTGATGATATATAAGGCAACAAACATAATAATCCACGGGATTAGGGTTCATCATTGTCGACCTCAAGCTCCTGGAATGGTGATGGGTCCCGATGGAAGTATAATGCCATTGGGTCAAGTGGATGGAGATGCAATTAGATTGGTTTCAGCTTCAAAGATTTGGATTGATCATAACACACTTTATGATTGCCAAGACGGTCTTCTAGATGTTACACGTGGTTCCACCAATATTACAATCTCCAACAATTGGTTTAGAGAGCAAAATAAGGTTATGCTTCTTGGACACGATGATGGATTTGTGAGAGACAAAAACATGAAAGTCACTGTTGTATACAATTATTTTGGACCTAATTGCCACCAACGCATGCCTAGAATTCGTCATGGTTATGCACATGTTGCGAATAATTTATACATGGGATGGGTGCAATATGCAATAGGAGGAAGCATGGAACCAAGCCTTAAAAGCCAATCAAACCTTTTTATAGCGCCAACCACGGGGAATAAGGAGGTGACATGGAGAAAAAGTAGTAACGGAATCGGAGACATGTGGGAATTTTATTCAGTTGGGGATGCTTTTGAAAATGGAGCTTCCTTCATGGAAACAAAAGGTGGACAGGAGAAAAAACCGAATTATAGCCCTGAACAAAATTTTGAAGTTGCTAATGCCAAATCTGTGAGATCATTGACAAGATCATCTGGTGTGTTGCAATGCAGTAAAACCTCAATATGTTGA 1179 0.3868 MTFNKLINSLFWCFFLLVVMVTFFTTNVSSTKQTKIEGMQMNVIDQCWRLNPEWRKHQQQLAVCSVGFAGKMTNNIGNDLIHYKVTDPSDNPLNPTPGTLRYGASKIQGKVWITFQKDMNIKLVKPLLISSFTTIDGRGVNVHIADNACLMIYKATNIIIHGIRVHHCRPQAPGMVMGPDGSIMPLGQVDGDAIRLVSASKIWIDHNTLYDCQDGLLDVTRGSTNITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQRMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIAPTTGNKEVTWRKSSNGIGDMWEFYSVGDAFENGASFMETKGGQEKKPNYSPEQNFEVANAKSVRSLTRSSGVLQCSKTSIC 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03846 392 PANTHER PECTATE LYASE 18-RELATED 35 388 IPR045032 GO:0030570
Trre16g03846 392 Gene3D - 41 385 IPR012334 -
Trre16g03846 392 SUPERFAMILY Pectin lyase-like 33 386 IPR011050 -
Trre16g03846 392 SMART amb_all 118 315 IPR002022 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 126 142 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 270 289 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 292 311 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 363 386 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Trre16g03846 392 PRINTS Pollen allergen Amb family signature 190 211 IPR018082 -
Trre16g03846 392 Pfam Pectate lyase 129 309 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03846 Trre-Chr16 43452246 43454046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03846 72 319 Polysaccharide Lyase AT5G09280 69.355 1.94e-138 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03846 K01728 - gmx:100811216 681.404