Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03845 ATGGTTTCTTCCTCCATTCCATCTCACACACTATTTCTTGCACTCATGTTCTTTTCTGCCATCCATATTCTACTTCAATTGCCACAAACCAATGGAACAAACTTCTCATACCCTTTAAATTCCACTCTTTCCTATGACACATATGTTGCATACTCTGCTCAGTCTCCAAATTTTTTAACCCTCACAAGCATATCTGATATATTTGACACCAGTCCTCTATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCCAGGCCAGCTTTTGCTGGTACCTATAACTTGTGGTTGCAGTGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTGATCAAACAAGGTGAAAGTTTCTATTACCTTTCAACCATTCCATATCAGAATCTCACTAATTGGATGACAGTGGAAGATTCAAATCCAAACCTGAATCCATATATGTTGACAGTAGGTACCAAAGTAGTCATTCCTATATTCTGTAGCTGTCCTTCAAAAGGGATAGAGTACTTGATTACTTATATATGGAAGCCTAATGACAATCTTACCCTTGTAGCTTCCATGTTTGGTGCATCACCACAGGACATAATCACTGCAAATGCAAACAAATTTGGTCAAAACTTCACTGCTGCAGCCAACCTTCCAGTTTTCATCCCAGTGAAAAATTTACCAGCTCTTCCACAATTATATTCTTCACTTGAAAGAAAGAGAAACAATCATTTTCATATTATCATTTCCATTGGTATGAGTCTAGGATGCACTCTTCTGATTTCACTATCATTATTACTGGTTTATGTGTATTGTTTGAGGAAAAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTAAGTTAATTTCTGAAGTTTCAAACTATGTAAGTAAGCCAGAAGTATATGAAGTTAGTATGCTTATGCAAGCTACAATGAACCTCAATGAACGGTGTAGGATAGGGAAATCGATGTACAAGGCTCAAATAGATGGTCATGTTTTAGCTGTGAAAAATGTAAAGGAAGATATCACTGTCACAGAAGAGTTAATGATTCTACAGAAAGTAAACCATGCAAATCTTGTGAAACTAATTGGTGTTTCTTCAGGATATGATGGTGTAAATCACTTCCTTGTGTATGAATATGCTGAAAATGGATCTCTTTATAATTGGTTGTTCTCTGAGTTTTTCACTCTTAGTTGGAATCAGAGCGAAAATGCTGAGGGGAATATGTTGTGGAAAGATATTAAGGGAGTTTTTGATATAGAAGAAAAGAGAGAGGAAAGTGTTAGAAGATGGATTGATCCTAAGTTGGGGAGTTTTTATAATGTTGTTGAAGCTATGAGTTTGTTCTCATTGGCTATGAATTGCATAAAAGAACAACTTTTGTTAAGACCAACTATGGGAGAAATTGTTCTTAGCCTTTCTCTTCTCACTCAACACTCTCCTACTTTGTTAGAGAGGTCTTGTAATTATGGATTAGATGTTGAGGTTATTACTGGAATGGTTAACTCCATCATAGCTCGTTGA 1524 0.3622 MVSSSIPSHTLFLALMFFSAIHILLQLPQTNGTNFSYPLNSTLSYDTYVAYSAQSPNFLTLTSISDIFDTSPLSIARASNIKDENMNLIPGQLLLVPITCGCSGNGNYSFANISHLIKQGESFYYLSTIPYQNLTNWMTVEDSNPNLNPYMLTVGTKVVIPIFCSCPSKGIEYLITYIWKPNDNLTLVASMFGASPQDIITANANKFGQNFTAAANLPVFIPVKNLPALPQLYSSLERKRNNHFHIIISIGMSLGCTLLISLSLLLVYVYCLRKRKACENKCVPSKLISEVSNYVSKPEVYEVSMLMQATMNLNERCRIGKSMYKAQIDGHVLAVKNVKEDITVTEELMILQKVNHANLVKLIGVSSGYDGVNHFLVYEYAENGSLYNWLFSEFFTLSWNQSENAEGNMLWKDIKGVFDIEEKREESVRRWIDPKLGSFYNVVEAMSLFSLAMNCIKEQLLLRPTMGEIVLSLSLLTQHSPTLLERSCNYGLDVEVITGMVNSIIAR 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03845 507 Pfam LysM domain 60 97 IPR018392 -
Trre16g03845 507 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Trre16g03845 507 Pfam Protein tyrosine and serine/threonine kinase 334 393 IPR001245 GO:0004672|GO:0006468
Trre16g03845 507 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 408 480 - -
Trre16g03845 507 SUPERFAMILY Protein kinase-like (PK-like) 322 401 IPR011009 -
Trre16g03845 507 Gene3D Transferase(Phosphotransferase) domain 1 309 417 - -
Trre16g03845 507 ProSiteProfiles LysM domain profile. 49 96 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03845 Trre-Chr16 43448402 43450168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03845 48 401 Receptor kinase-like Gene Family AT2G23770 24.874 4.63e-27 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre16g03845 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03845 - - vra:106777834 406.757