Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03844 ATGGTTTCTTCCTCCATTCCATCTCACACACTATTTCTTGCACTCATGTTCTTTTCTGCCATCCATATTCTACTTCAATTGCCACAAACCAATGGAACAAACTTCTCATACCCTTTAAATTCCACTCTTTCCTATGACACATATGTTGCATACTCTGCTCAGTCTCCAAATTTTTTAACCCTCACAAGCATATCTGATATATTTGACACCAGTCCTCTATCCATTGCAAGAGCAAGCAACATAAAAGATGAAAATATGAACCTCATTCCAGGCCAGCTTTTGCTGGTACCTATAACTTGTGGTTGCAGTGGAAATGGAAACTACTCTTTTGCCAATATCTCACACTTGATCAAACAAGGTGAAAGTTTCTATTACCTTTCAACCATTCCATATCAGAATCTCACTAATTGGATGACAGTGGAAGATTCAAATCCAAACCTGAATCCATATATGTTGACAGTAGGTACCAAAGTAGTCATTCCTATATTCTGTAGCTGTCCTTCAAAAGGGATAGAGTACTTGATTACTTATATATGGAAGCCTAATGACAATCTTACCCTTGTAGCTTCCATGTTTGGTGCATCACCACAGGACATAATCACTGCAAATGCAAACAAATTTGGTCAAAACTTCACTGCTGCAGCCAACCTTCCAGTTTTCATCCCAGTGAAAAATTTACCAGCTCTTCCACAATTATATTCTTCACTTGAAAGAAAGAGAAACAATCATTTTCATATTATCATTTCCATTGGTATGAGTCTAGGATGCACTCTTCTGATTTCACTATCATTATTACTGGTTTATGTGTATTGTTTGAGGAAAAGAAAGGCTTGTGAGAATAAGTGTGTGCCTTCTAAGTTAATTTCTGAAGTTTCAAACTATGTAAGTAAGCCAGAAGTATATGAAGTTAGTATGCTTATGCAAGCTACAATGAACCTCAATGAACGGTGTAGGATAGGGAAATCGATGTACAAGGCTCAAATAGATGGTCATGTTTTAGCTGTGAAAAATGTAAAGGAAGATATCACTGTCACAGAAGAGTTAATGATTCTACAGAAAGTAAACCATGCAAATCTTGTGAAACTAATTGGTGTTTCTTCAGGATATGATGGTGTAAATCACTTCCTTGTGTATGAATATGCTGAAAATGGATCTCTTTATAATTGGTTGTTCTCTGAGTTTTTCACTCTTAGTTGGAATCAGAGGTTAAGCATAGCAATTGATGTTGCAATTGGTCTGCAATACATGCATGAACACACACAACCTAGTATAGTCCATAGGAACATCAAATCAAGTAACATTCTTCTTGACTCAAACTTTAAGGCCAAGATATCAAACTTCTCTGTCGCAAGAACTACAAAGAGTCCTATGATAACAAAAGTTGATGTTTTTGCTTATGGGGTGATTCTGTTGGAGTTAATAACAGGAAAAAAGTTTTTGTCGTGTAGCGAAAATGCTGAGGGGAATATGTTGTGGAAAGATATTAAGGGAGTTTTTGATATAGAAGAAAAGAGAGAGGAAAGTGTTAGAAGATGGATTGATCCTAAGTTGGGGAGTTTTTATAATGTTGTTGAAGCTATGAGTTTGTTCTCATTGGCTATGAATTGCATAAAAGAACAACTTTTGTTAAGACCAACTATGGGAGAAATTGTTCTTAGCCTTTCTCTTCTCACTCAACACTCTCCTACTTTGTTAGAGAGGTCTTGTAATTATGGATTAGATGTTGAGGTTATTACTGGAATGGTTAACTCCATCATAGCTCGTTGA 1767 0.3616 MVSSSIPSHTLFLALMFFSAIHILLQLPQTNGTNFSYPLNSTLSYDTYVAYSAQSPNFLTLTSISDIFDTSPLSIARASNIKDENMNLIPGQLLLVPITCGCSGNGNYSFANISHLIKQGESFYYLSTIPYQNLTNWMTVEDSNPNLNPYMLTVGTKVVIPIFCSCPSKGIEYLITYIWKPNDNLTLVASMFGASPQDIITANANKFGQNFTAAANLPVFIPVKNLPALPQLYSSLERKRNNHFHIIISIGMSLGCTLLISLSLLLVYVYCLRKRKACENKCVPSKLISEVSNYVSKPEVYEVSMLMQATMNLNERCRIGKSMYKAQIDGHVLAVKNVKEDITVTEELMILQKVNHANLVKLIGVSSGYDGVNHFLVYEYAENGSLYNWLFSEFFTLSWNQRLSIAIDVAIGLQYMHEHTQPSIVHRNIKSSNILLDSNFKAKISNFSVARTTKSPMITKVDVFAYGVILLELITGKKFLSCSENAEGNMLWKDIKGVFDIEEKREESVRRWIDPKLGSFYNVVEAMSLFSLAMNCIKEQLLLRPTMGEIVLSLSLLTQHSPTLLERSCNYGLDVEVITGMVNSIIAR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03844 588 Pfam LysM domain 60 97 IPR018392 -
Trre16g03844 588 Gene3D Transferase(Phosphotransferase) domain 1 457 570 - -
Trre16g03844 588 Gene3D Transferase(Phosphotransferase) domain 1 381 456 - -
Trre16g03844 588 Pfam Protein tyrosine and serine/threonine kinase 334 455 IPR001245 GO:0004672|GO:0006468
Trre16g03844 588 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 17 561 - -
Trre16g03844 588 ProSiteProfiles LysM domain profile. 175 219 IPR018392 -
Trre16g03844 588 Gene3D Phosphorylase Kinase; domain 1 285 380 - -
Trre16g03844 588 SUPERFAMILY Protein kinase-like (PK-like) 322 555 IPR011009 -
Trre16g03844 588 ProSiteProfiles Protein kinase domain profile. 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03844 588 ProSiteProfiles LysM domain profile. 49 96 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03844 Trre-Chr16 43448402 43450168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03844 79 557 Receptor kinase-like Gene Family AT3G21630 30.996 4.64e-59 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre16g03844 PK_Tyr_Ser-Thr 5.1e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03844 - - vra:106777834 623.239