Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03843 ATGGACCAAGCCGAATTAACCACCGATCAGGTTCTGAATAGGGATATCCCATGGGAAACCTACATGTCCACCAAGCTGATTTCTGGAACAAGCCTTCAGCTCTTAAGGCGTTACGATCATCGATCAGAAAGTCAGAGAGCACAGTTGCTCGATGATGATGGTCCGGCTTATGTTCGCGTGTTTGTTCGTGTTTTGCGCGATATTTTCAAGGAAGATACTGTTGAGTATGTTTTGGCTTTGATAGATGAAATGCTGACAGCGAACCCGAAAAGAGCTAGACTGTTTCATGACAATGCCCTTGCGGATGATGATACTTATGAGCCTTTCCTAAGTTAA 336 0.4435 MDQAELTTDQVLNRDIPWETYMSTKLISGTSLQLLRRYDHRSESQRAQLLDDDGPAYVRVFVRVLRDIFKEDTVEYVLALIDEMLTANPKRARLFHDNALADDDTYEPFLS 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03843 111 SUPERFAMILY ARM repeat 8 110 IPR016024 -
Trre16g03843 111 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 1 110 IPR004908 GO:0000221|GO:0046961|GO:1902600
Trre16g03843 111 Gene3D - 4 111 IPR011989 -
Trre16g03843 111 Pfam V-ATPase subunit H 4 110 IPR004908 GO:0000221|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03843 Trre-Chr16 43442245 43442964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03843 1 110 Primary Pumps ATPases(2) AT3G42050 76.364 1.08e-57 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03843 K02144 - lja:Lj4g3v0913490.1 210.69