Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03842 ATGGATGATTTGAATGATATTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTTTCTCTTGCCGAGGAAGATCATAAAGGGAAAAAAGTTATAGAGGACGACTCTGAATCTGAAGATGAAGAACTGTGTCCACTTGATGACGAGGAAGATGACCATGTCAGTGAAGTTCAACAAGATGAAGATGACCATGTTGCTAAAATTCAACAGGATGAAGAACAAAACCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCGCCTCCTCGATCTCAAACTGATTCTATATTTCAACCTTTTACAAATCTCTTTCCGCCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGCTGCCATGCTTGCAAACTGCCAATCACTGATTACGAGTACTCCATGTCTGGAAATCGCCCTTACCATAAACCATGCTATAAGGAGCTGCATCATCCAAGGTGTGACGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAGCGCGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGCCTTGAATGTCTCGATTCGGCTATTATGGATACTCATGAATGTCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATCGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGTTTGTCAGAAGAGCAAACTGTCCCCACTATTTTGAGGAGACCAAGTATAGGAGCAGGCTACCGTGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGATGTGAAGTTACAGCCATACTTGTTTTGTACGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCCTGGCTAAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGATTCGGAGATCTATTCCGGCTCTGGAAGTGAAGAAGCATCATCATCTTCGACTTCATCTTCGTCTTCATCATCACCTTCCTCCACATCATCAAAGAAGGGTAAACGGTCCGATTTCGAAAAGGAACTCGGTAAATTTTTTAAACACCAGATTGAGTCAGATAGCTCACCAGCATATGGAGATGGATTCAGAGAGGGCAACCAGGCAGTGCTCAAGTACGGGCTTAGACGGACCCTTGACCATATCCGAATCACCGGAAGTTATCCATAA 1473 0.4297 MDDLNDIEREEIDRAIALSLAEEDHKGKKVIEDDSESEDEELCPLDDEEDDHVSEVQQDEDDHVAKIQQDEEQNLDEVQLEEDEQLARAIQESLSIGSPPRSQTDSIFQPFTNLFPPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKPCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSTSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIESDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSYP 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03842 490 MobiDBLite consensus disorder prediction 22 61 - -
Trre16g03842 490 ProSiteProfiles LIM domain profile. 120 180 IPR001781 -
Trre16g03842 490 SMART lim_4 121 173 IPR001781 -
Trre16g03842 490 PANTHER PROTEIN DA1-RELATED 2 5 490 IPR045218 -
Trre16g03842 490 MobiDBLite consensus disorder prediction 34 56 - -
Trre16g03842 490 Coils Coil 68 88 - -
Trre16g03842 490 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 149 204 - -
Trre16g03842 490 Pfam Protein DA1 271 485 IPR022087 -
Trre16g03842 490 ProSitePatterns LIM zinc-binding domain signature. 122 156 IPR001781 -
Trre16g03842 490 CDD LIM_DA1 122 174 - -
Trre16g03842 490 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 117 147 - -
Trre16g03842 490 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 81 100 IPR003903 -
Trre16g03842 490 Gene3D Cysteine Rich Protein 118 181 - -
Trre16g03842 490 FunFam Protein DA1-related 1 116 175 - -
Trre16g03842 490 SMART uim 81 100 IPR003903 -
Trre16g03842 490 SMART uim 7 26 IPR003903 -
Trre16g03842 490 Pfam LIM domain 122 176 IPR001781 -
Trre16g03842 490 MobiDBLite consensus disorder prediction 411 433 - -
Trre16g03842 490 MobiDBLite consensus disorder prediction 411 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03842 Trre-Chr16 43435183 43438573 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g03842 DA1-like 2.2e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03842 - - gmx:100806605 842.417