Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03841 ATGGGTTGGCTTACCAAGTTGCTAAAGGGTTCCGGTCATAAATATTCAGGACGAGGATACAACGGGAAATATGGACACGACAGAGATTCGAATAATAATGATAATTCAATGGATGATTTGAATGATATTGAGAGAGAAGAAATTGATCGTGCAATTGCGCTTTCTCTTGCCGAGGAAGATCATAAAGGGAAAAAAGTTATAGAGGACGACTCTGAATCTGAAGATGAAGAACTGTGTCCACTTGATGACGAGGAAGATGACCATGTCAGTGAAGTTCAACAAGATGAAGATGACCATGTTGCTAAAATTCAACAGGATGAAGAACAAAACCTCGATGAAGTTCAACTTGAGGAAGATGAACAACTTGCCAGGGCAATTCAAGAAAGTTTGAGCATTGGTTCGCCTCCTCGATCTCAAACTGATTCTATATTTCAACCTTTTACAAATCTCTTTCCGCCTGTATACAGAATCTGTGCTGGCTGCAATGCCGAGATTGGCCATGGAAGATTTTTGAGTTGCATGGGAGCTGTATGGCATCCAGAATGTTTTTGCTGCCATGCTTGCAAACTGCCAATCACTGATTACGAGTACTCCATGTCTGGAAATCGCCCTTACCATAAACCATGCTATAAGGAGCTGCATCATCCAAGGTGTGACGTTTGCAAGATCTTTATCCCACAAAATTCAGCTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGTCCATCACATGAGCGCGATGGCACTCCTCGTTGTTGTAGCTGTCAGAGAATGGAGTCAACGGACACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTGTGCCTTGAATGTCTCGATTCGGCTATTATGGATACTCATGAATGTCAACCTCTCTATCTTGAAATACAAGAATTTTATGAAGGTTTGCATATGAAAATCGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAAGCACTGAATGAAGCCATGGAGGGGGAAAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGTTTGTCAGAAGAGCAAACTGTCCCCACTATTTTGAGGAGACCAAGTATAGGAGCAGGCTACCGTGTCATAGATATGATAACCGAGCCTTTTAGGCTGATACGTCGATGTGAAGTTACAGCCATACTTGTTTTGTACGGCCTTCCTAGGTTACTGACAGGATCAATCCTAGCTCATGAAATGATGCATGCCTGGCTAAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAAGGAATATGCCAAGTCTTGGCTCATATGTGGTTAGATTCGGAGATCTATTCCGGCTCTGGAAGTGAAGAAGCATCATCATCTTCGACTTCATCTTCGTCTTCATCATCACCTTCCTCCACATCATCAAAGAAGGGTAAACGGTCCGATTTCGAAAAGGAACTCGGTAAATTTTTTAAACACCAGATTGAGTCAGATAGCTCACCAGCATATGGAGATGGATTCAGAGAGGGCAACCAGGCAGTGCTCAAGTACGGGCTTAGACGGACCCTTGACCATATCCGAATCACCGGAAGTTATCCATAA 1581 0.4276 MGWLTKLLKGSGHKYSGRGYNGKYGHDRDSNNNDNSMDDLNDIEREEIDRAIALSLAEEDHKGKKVIEDDSESEDEELCPLDDEEDDHVSEVQQDEDDHVAKIQQDEEQNLDEVQLEEDEQLARAIQESLSIGSPPRSQTDSIFQPFTNLFPPVYRICAGCNAEIGHGRFLSCMGAVWHPECFCCHACKLPITDYEYSMSGNRPYHKPCYKELHHPRCDVCKIFIPQNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESTDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPSIGAGYRVIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSGSGSEEASSSSTSSSSSSSPSSTSSKKGKRSDFEKELGKFFKHQIESDSSPAYGDGFREGNQAVLKYGLRRTLDHIRITGSYP 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03841 526 PANTHER PROTEIN DA1-RELATED 2 3 526 IPR045218 -
Trre16g03841 526 CDD LIM_DA1 158 210 - -
Trre16g03841 526 FunFam Protein DA1-related 1 152 211 - -
Trre16g03841 526 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Trre16g03841 526 Gene3D Cysteine Rich Protein 154 216 - -
Trre16g03841 526 MobiDBLite consensus disorder prediction 70 92 - -
Trre16g03841 526 Coils Coil 104 124 - -
Trre16g03841 526 Pfam Protein DA1 307 521 IPR022087 -
Trre16g03841 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 240 - -
Trre16g03841 526 MobiDBLite consensus disorder prediction 20 69 - -
Trre16g03841 526 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Trre16g03841 526 MobiDBLite consensus disorder prediction 1 97 - -
Trre16g03841 526 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 153 183 - -
Trre16g03841 526 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Trre16g03841 526 SMART uim 43 62 IPR003903 -
Trre16g03841 526 SMART uim 117 136 IPR003903 -
Trre16g03841 526 SMART lim_4 157 209 IPR001781 -
Trre16g03841 526 MobiDBLite consensus disorder prediction 447 474 - -
Trre16g03841 526 MobiDBLite consensus disorder prediction 447 469 - -
Trre16g03841 526 Pfam LIM domain 158 212 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03841 Trre-Chr16 43435075 43438573 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre16g03841 DA1-like 2.6e-105 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03841 - - gmx:100806605 880.937