Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03840 ATGTCACAAGATTATCATCACCACCACGACCACCACCAGAACCACCACCAACAAGGAATCTTCAACTTCTCGAATGGATTCGAGAGGTCGAATACTCCATTAGAAAACAGCAATTCACCAAACCACCAACAACAAATTCAAAGAGACAAAGTGAGACTACATGGCTTCGACTCACAACAACAACCACCACCACAACCGTCACTAATAGGTGGCGGTATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCCGAGATGTTCAATTTCCCTCACGGTGCCTCGTCTGCAGCCGAATTATTAGAACAACAACAATTGGCATCAACAAGAACAACACCACCACCACCACCACCACCACATGGAATAGCCAATTCCAATGACTGGTACGGTAACAGACAATCAATTTTAACAGATTCAAAAAATCATCATCATCATAATAATAATAATAATAACCGTGACAGTAGCAGCAGCATATTTCATCATCAGAATCATCATCAGATGTCAAACATTAATGCTGAGTCAGCAGCTGCCATGCAGCTTTTTCTCATGAATCCACAAACCACCAGATCCCCTTCTCCTCCACCACCATCTACTAATTCTTCTACTCTTCACATGTTACTTCCAAATCCTTCAACTACAAATCTTCAAGGTTTTAACACCGGCGGAACCGCCGGAGGGTCATTTGGTCAATTCACATGGGGACAAGAAGGAGGAGGAGGAGGAACAACAAGTCATCATCAACTCAACAACAACCAAACTGAGATAGCAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCTTCCTTACAACAACAACATCATCATTCAGATGAATTAAGAATGGGTGACCCTGCTGGTTTTTTATATTACAATCAAGGAGCAGGAACATCTTACAAGAATCTTGGTGGTGTTCATCATCATTTACAAGGAAGTGGATTAGGACAAATTAATCATATTCATCATGGACATGTTGGATTTGGTTCATCATCTTCTCCTTCTTCTTTAGGTGTTGTTAATGTGTTGAGAAATTCAAAGTATGTTAAAGCTGCTCAAGAATTGCTTGAAGAGTTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGTGGTGGTAGTGTTGGTGGTGGTGGTGGTGGTGCTTCTTCATCTTCTTCAAAAGATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTGGATAGAAGATACAGTCACTACTGTGAACAAATGCAAATGGTGGTGAATTCATTTGATTTAGTAATGGGATATGGTGCTGCAGTTCCATACACAGCACTAGCACAAAAAGCAATGTCAAGGCACTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACACAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTGGGGACATCAGGTTTGACTAAAGGAGAGACACCAAGACTTAAACTTCTTGAACAAAGTTTAAGACAGCAAAGAGCGTTTCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAAAGAGGTTTGCCTGAACGTTCTGTCAACATTTTGAGAGCTTGGCTCTTTGAGCATTTTCTTCACCCGTACCCGAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGAGTTCGTTTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCATCAGAAGGAGATCAAGAAGAAGATAGAGAAAATAACAACAAAAATATTCAAAGCAGTACAAGCAACAACAACATCACTAGTGGTCACATATCTACAAATATTGCACAAACTTCAACACCATCTTCAACAATACCACAACCTACTAGTAACAACAAGAGATCCAACAATATTATTATCAATGCCAATGAAAATGACCCATCACTTACACCAATAATAAATAATAGACAACCCTTCTCCGAAAACCAAGTCGCCACCCAAAAAACCACCGTATCTGAGGTGGAGCCACCTATCTCCGACTCAATGGCTATTGATGACACATGTCGACATGGAAGCTTTGTTACTGCGGATTATGGGTCTACTTCTGCTGACACACTCATCAGATTTGGGACCGCTACTTCCGGTGATGTGTCACTCACTTTAGGGCTACGTCATGCCGGAAATTTGCCGGACAAAACATCACCACCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2334 0.4079 MSQDYHHHHDHHQNHHQQGIFNFSNGFERSNTPLENSNSPNHQQQIQRDKVRLHGFDSQQQPPPQPSLIGGGIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQLASTRTTPPPPPPPHGIANSNDWYGNRQSILTDSKNHHHHNNNNNNRDSSSSIFHHQNHHQMSNINAESAAAMQLFLMNPQTTRSPSPPPPSTNSSTLHMLLPNPSTTNLQGFNTGGTAGGSFGQFTWGQEGGGGGTTSHHQLNNNQTEIASVVEGQGLSLSLSSSLQQQHHHSDELRMGDPAGFLYYNQGAGTSYKNLGGVHHHLQGSGLGQINHIHHGHVGFGSSSSPSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGSVGGGGGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGDQEEDRENNNKNIQSSTSNNNITSGHISTNIAQTSTPSSTIPQPTSNNKRSNNIIINANENDPSLTPIINNRQPFSENQVATQKTTVSEVEPPISDSMAIDDTCRHGSFVTADYGSTSADTLIRFGTATSGDVSLTLGLRHAGNLPDKTSPPFSLTDFGGI 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03840 777 MobiDBLite consensus disorder prediction 627 667 - -
Trre16g03840 777 SUPERFAMILY Homeodomain-like 539 604 IPR009057 -
Trre16g03840 777 MobiDBLite consensus disorder prediction 607 667 - -
Trre16g03840 777 MobiDBLite consensus disorder prediction 23 48 - -
Trre16g03840 777 ProSiteProfiles 'Homeobox' domain profile. 534 597 IPR001356 GO:0003677
Trre16g03840 777 Gene3D - 540 602 - -
Trre16g03840 777 SMART prehox3 343 485 IPR006563 -
Trre16g03840 777 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 172 622 - -
Trre16g03840 777 SMART HOX_1 537 601 IPR001356 GO:0003677
Trre16g03840 777 CDD homeodomain 537 598 IPR001356 GO:0003677
Trre16g03840 777 MobiDBLite consensus disorder prediction 379 411 - -
Trre16g03840 777 FunFam BEL1-like homeodomain protein 4 540 602 - -
Trre16g03840 777 MobiDBLite consensus disorder prediction 23 46 - -
Trre16g03840 777 Pfam Associated with HOX 348 484 IPR006563 -
Trre16g03840 777 Pfam Homeobox KN domain 554 593 IPR008422 GO:0003677|GO:0006355
Trre16g03840 777 MobiDBLite consensus disorder prediction 109 163 - -
Trre16g03840 777 MobiDBLite consensus disorder prediction 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03840 Trre-Chr16 43373276 43382282 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03840 343 775 Homeobox Transcription Factor Family AT2G23760 53.799 4.43e-148 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre16g03840 POX 1.1e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03840 - - mtr:11411247 1119.76