Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03839 ATGGGAATAGCAACAACACAATCATCAATTCCTTCAACTTTCTCAAATTCATCAAACACTTACCAATATCATAATTCCTTTAATTCAATCTTACAAAAGTCTCAAAACTCAAACAATTCTATGTCACAAGATTATCATCACCACCACGACCACCACCAGAACCACCACCAACAAGGAATCTTCAACTTCTCGAATGGATTCGAGAGGTCGAATACTCCATTAGAAAACAGCAATTCACCAAACCACCAACAACAAATTCAAAGAGACAAAGTGAGACTACATGGCTTCGACTCACAACAACAACCACCACCACAACCGTCACTAATAGGTGGCGGTATAGAAGAAGAACAAGAAGCTCTCCCGGTTTACGAAACAACCGGAATGTTGTCCGAGATGTTCAATTTCCCTCACGGTGCCTCGTCTGCAGCCGAATTATTAGAACAACAACAATTGGCATCAACAAGAACAACACCACCACCACCACCACCACCACATGGAATAGCCAATTCCAATGACTGGTACGGTAACAGACAATCAATTTTAACAGATTCAAAAAATCATCATCATCATAATAATAATAATAATAACCGTGACAGTAGCAGCAGCATATTTCATCATCAGAATCATCATCAGATGTCAAACATTAATGCTGAGTCAGCAGCTGCCATGCAGCTTTTTCTCATGAATCCACAAACCACCAGATCCCCTTCTCCTCCACCACCATCTACTAATTCTTCTACTCTTCACATGTTACTTCCAAATCCTTCAACTACAAATCTTCAAGGTTTTAACACCGGCGGAACCGCCGGAGGGTCATTTGGTCAATTCACATGGGGACAAGAAGGAGGAGGAGGAGGAACAACAAGTCATCATCAACTCAACAACAACCAAACTGAGATAGCAAGTGTTGTTGAAGGACAAGGTCTTTCATTGTCTTTATCTTCTTCCTTACAACAACAACATCATCATTCAGATGAATTAAGAATGGGTGACCCTGCTGGTTTTTTATATTACAATCAAGGAGCAGGAACATCTTACAAGAATCTTGGTGGTGTTCATCATCATTTACAAGGAAGTGGATTAGGACAAATTAATCATATTCATCATGGACATGTTGGATTTGGTTCATCATCTTCTCCTTCTTCTTTAGGTGTTGTTAATGTGTTGAGAAATTCAAAGTATGTTAAAGCTGCTCAAGAATTGCTTGAAGAGTTTTGTAGTGTTGGAAGGGGTCAATTCAAGAAGAATAAATTTAGTAGACAATTATCAAACCCTAATTCAAATCAAGGTGGTGGTAGTGTTGGTGGTGGTGGTGGTGGTGCTTCTTCATCTTCTTCAAAAGATGTTTCACCTTTGTCACCTGCTGATAGGATTGAGCATCAAAGAAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTGGATAGAAGATACAGTCACTACTGTGAACAAATGCAAATGGTGGTGAATTCATTTGATTTAGTAATGGGATATGGTGCTGCAGTTCCATACACAGCACTAGCACAAAAAGCAATGTCAAGGCACTTTCGTTGTTTAAAGGATGCAATAACAGCACAGTTGAAACACAGTTGTGAGTTATTGGGAGAGAAAGATGGTGTGGGGACATCAGGTTTGACTAAAGGAGAGACACCAAGACTTAAACTTCTTGAACAAAGTTTAAGACAGCAAAGAGCGTTTCATCAAATGGGAATGATGGAACAAGAAGCTTGGAGACCACAAAGAGGTTTGCCTGAACGTTCTGTCAACATTTTGAGAGCTTGGCTCTTTGAGCATTTTCTTCACCCGTACCCGAGTGATGCAGATAAGCATCTCTTAGCAAGACAGACTGGCCTTTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCTAGAGTTCGTTTGTGGAAACCCATGGTAGAAGATATGTACCAACAAGAACTTAAAGAAGCAGAAGGATCATCAGAAGGAGATCAAGAAGAAGATAGAGAAAATAACAACAAAAATATTCAAAGCAGTACAAGCAACAACAACATCACTAGTGGTCACATATCTACAAATATTGCACAAACTTCAACACCATCTTCAACAATACCACAACCTACTAGTAACAACAAGAGATCCAACAATATTATTATCAATGCCAATGAAAATGACCCATCACTTACACCAATAATAAATAATAGACAACCCTTCTCCGAAAACCAAGTCGCCACCCAAAAAACCACCGTATCTGAGGTGGAGCCACCTATCTCCGACTCAATGGCTATTGATGACACATGTCGACATGGAAGCTTTGTTACTGCGGATTATGGGTCTACTTCTGCTGACACACTCATCAGATTTGGGACCGCTACTTCCGGTGATGTGTCACTCACTTTAGGGCTACGTCATGCCGGAAATTTGCCGGACAAAACATCACCACCTTTCTCTCTTACAGACTTTGGAGGCATTTAA 2454 0.4022 MGIATTQSSIPSTFSNSSNTYQYHNSFNSILQKSQNSNNSMSQDYHHHHDHHQNHHQQGIFNFSNGFERSNTPLENSNSPNHQQQIQRDKVRLHGFDSQQQPPPQPSLIGGGIEEEQEALPVYETTGMLSEMFNFPHGASSAAELLEQQQLASTRTTPPPPPPPHGIANSNDWYGNRQSILTDSKNHHHHNNNNNNRDSSSSIFHHQNHHQMSNINAESAAAMQLFLMNPQTTRSPSPPPPSTNSSTLHMLLPNPSTTNLQGFNTGGTAGGSFGQFTWGQEGGGGGTTSHHQLNNNQTEIASVVEGQGLSLSLSSSLQQQHHHSDELRMGDPAGFLYYNQGAGTSYKNLGGVHHHLQGSGLGQINHIHHGHVGFGSSSSPSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKKNKFSRQLSNPNSNQGGGSVGGGGGGASSSSSKDVSPLSPADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMQMVVNSFDLVMGYGAAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGVGTSGLTKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGSSEGDQEEDRENNNKNIQSSTSNNNITSGHISTNIAQTSTPSSTIPQPTSNNKRSNNIIINANENDPSLTPIINNRQPFSENQVATQKTTVSEVEPPISDSMAIDDTCRHGSFVTADYGSTSADTLIRFGTATSGDVSLTLGLRHAGNLPDKTSPPFSLTDFGGI 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03839 817 MobiDBLite consensus disorder prediction 647 707 - -
Trre16g03839 817 MobiDBLite consensus disorder prediction 34 88 - -
Trre16g03839 817 FunFam BEL1-like homeodomain protein 4 580 642 - -
Trre16g03839 817 SMART prehox3 383 525 IPR006563 -
Trre16g03839 817 Pfam Associated with HOX 388 524 IPR006563 -
Trre16g03839 817 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 209 662 - -
Trre16g03839 817 Pfam Homeobox KN domain 594 633 IPR008422 GO:0003677|GO:0006355
Trre16g03839 817 CDD homeodomain 577 638 IPR001356 GO:0003677
Trre16g03839 817 MobiDBLite consensus disorder prediction 149 203 - -
Trre16g03839 817 ProSiteProfiles 'Homeobox' domain profile. 574 637 IPR001356 GO:0003677
Trre16g03839 817 MobiDBLite consensus disorder prediction 419 451 - -
Trre16g03839 817 SMART HOX_1 577 641 IPR001356 GO:0003677
Trre16g03839 817 SUPERFAMILY Homeodomain-like 579 644 IPR009057 -
Trre16g03839 817 MobiDBLite consensus disorder prediction 419 458 - -
Trre16g03839 817 Gene3D - 580 642 - -
Trre16g03839 817 MobiDBLite consensus disorder prediction 57 86 - -
Trre16g03839 817 MobiDBLite consensus disorder prediction 667 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03839 Trre-Chr16 43373276 43382402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03839 383 815 Homeobox Transcription Factor Family AT2G23760 53.799 7.94e-148 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre16g03839 POX 1.2e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03839 - - mtr:11411247 1166.37