Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03833 ATGGAAAAACTGATTTGCATGGAAAATTCTGAATATGATATAATGAAACTTGATGCTGAATCTAGTGACGATTCATTACTTGTAATGCAAGTACCAGCTCAGGTTGAAAACCAAGTTCAACTCCTAGAGAATGGTGATGATAATGGTCTGGTAGAAAACCAAGTGCAAGAAGAGAATGAGGATGTTAATGATAATGATAATGGTCAGGTAGAGAATGAGGATGTTAATGTTAATGTTAATGGTCAGGTAGAAAACCAATTGCAAGAAGAGAATGAGAATGTTAATGGATTGGCTATTCAAATATTTGAAGAACCTGGTACTAAGGATAGTAGTACTAGTACTACAAATCGACAATGCAGAGCGTATATCGAAGCCAAGGGAAGGCAGTGCGCGAGAACGGCAATTAGAAATGATATATACTGTTGTGCGCATTTCTCAAATAAAAAAGGGAAACGTGTTGAAGTTCATACTCCAATGTGTGGAGGTATAACTGTATCCGGTACTAGATGTAAGCACCGTTCCCTTCGTGGACATGCATTCTGCAAGAAACATCTCCGCAATGTAAAGAAGGGACAAACGTCAAATTCGAAACGTCGCACTAGGAAAAGGAAATTTGAAGAAACCTGCACTGACATGGTCTTGGCACATCAGGAAATTCCATTGGAAATCAACCCGGTGTCAGTCATCAACAAGGATGATTCTTTCGCGGCAAGGAACATCATAGGTGAAACTCTTACGCTTTCCAGTACTGATCGCAATGAAGTTAAGGCAGTTCAGTGGATAGGCTCGCCTCACCGTGGCAATGATCGTGAAGACTCTTGCTTCGATAATGAGAATGGTTTCAAGTGTAAGATTTGCTTTGAAGAATTTTCTAATGATCAAACACTTGGCAACCATTGGATGGAAAATCATGAAAAAGAAGCAAAGTGGTTATTCAGAAGCTATGCTTGTGCAATTTGCCTCGACTCATTCAAGAACAAGAAATTAATGGAAACTCATGTTCATGAGAGACACCGTGTGCAGTTTTTCGAGCATTCTGTACTTTTAATATGTATCCCTTGTGGTAGACATTTTGAAAATATGGACGAATTGTGGCTACATGTTATGTCATCTCACCCTGCTGAATTGAGACTGTTGAAAGCTCCTGAGCAACTGACTTTGTCTACCGGCGATGATTCTCTTAAAATGATTGAGTATGGAAACGAAGCTTCTTTGAACAATAATTCCAAGACTCCAAGTGATTTACAGAAGTTAGTCTGCAAGTTTTGTGGTTTGAAATTTGATTTACTGTCTGATCTCAATCGCCATCGTCAAGCTGTTCATATGGAGCGCAATGTACCTAGTTGGGTAGAAGCATCAAATAGGTTAGGGAGAAGGGCTAGATCTAATCTGAATAGAAGTCGTCGTGCAAATAATAGTCTTGATATTTTATCATCGACTGTTTGGGCTGAATGCTGCCAAGACAATCTCGAGGCCTTACTTAAAGCAAAATATGGATATTTGCCGGAAAGACTGTATTTGAAGGCACCAAAACTTTGCGGTGATTTGGCATCAGAGTCCAACATTTGA 1569 0.3945 MEKLICMENSEYDIMKLDAESSDDSLLVMQVPAQVENQVQLLENGDDNGLVENQVQEENEDVNDNDNGQVENEDVNVNVNGQVENQLQEENENVNGLAIQIFEEPGTKDSSTSTTNRQCRAYIEAKGRQCARTAIRNDIYCCAHFSNKKGKRVEVHTPMCGGITVSGTRCKHRSLRGHAFCKKHLRNVKKGQTSNSKRRTRKRKFEETCTDMVLAHQEIPLEINPVSVINKDDSFAARNIIGETLTLSSTDRNEVKAVQWIGSPHRGNDREDSCFDNENGFKCKICFEEFSNDQTLGNHWMENHEKEAKWLFRSYACAICLDSFKNKKLMETHVHERHRVQFFEHSVLLICIPCGRHFENMDELWLHVMSSHPAELRLLKAPEQLTLSTGDDSLKMIEYGNEASLNNNSKTPSDLQKLVCKFCGLKFDLLSDLNRHRQAVHMERNVPSWVEASNRLGRRARSNLNRSRRANNSLDILSSTVWAECCQDNLEALLKAKYGYLPERLYLKAPKLCGDLASESNI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03833 522 ProSitePatterns Zinc finger C2H2 type domain signature. 351 372 IPR013087 -
Trre16g03833 522 Pfam CCCH zinc finger in TRM13 protein 117 144 IPR021721 GO:0008168
Trre16g03833 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 309 IPR013087 -
Trre16g03833 522 Coils Coil 80 100 - -
Trre16g03833 522 Pfam Zinc finger C2H2-type, 3 repeats 317 442 IPR040689 -
Trre16g03833 522 ProSitePatterns Zinc finger C2H2 type domain signature. 283 304 IPR013087 -
Trre16g03833 522 ProSitePatterns Zinc finger C2H2 type domain signature. 317 338 IPR013087 -
Trre16g03833 522 Gene3D Classic Zinc Finger 276 349 - -
Trre16g03833 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 349 377 IPR013087 -
Trre16g03833 522 ProSitePatterns Zinc finger C2H2 type domain signature. 420 441 IPR013087 -
Trre16g03833 522 ProSiteProfiles Zinc finger C2H2 type domain profile. 418 446 IPR013087 -
Trre16g03833 522 SMART c2h2final6 349 372 IPR013087 -
Trre16g03833 522 SMART c2h2final6 281 304 IPR013087 -
Trre16g03833 522 SMART c2h2final6 315 338 IPR013087 -
Trre16g03833 522 SMART c2h2final6 418 441 IPR013087 -
Trre16g03833 522 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 462 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03833 Trre-Chr16 43311090 43312658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03833 130 515 C2H2 Transcription Factor Family AT2G23740 28.330 4.98e-42 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre16g03833 zf-C2H2_3rep 1.8e-50 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03833 - - tpra:123922793 694.886