Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03831 ATGGAAAAACTAATTTGCATGGAAAATTCTCAATGTGATATAATGAAACTAGATGATGAATCTAGTGACGATTCATTACTGGTAATGCAAGTACCAACTCAGGTTGAAAATGAAGTTCAAGTTGAAGAGAATGTTGATTTTATTGGTCAGGTAGAAAATCAAGTTCAAGTTCAGGAGAATGATGTCAATGGTCAAGTTGAAAACCAAGTTCAAGTGCAAGAGAATGTTAATAAAGTGGCAGTCAATCCTGTAGATTCTGAGATCTTGTCTAGCAATGGATTGGCTATTCAAATATTTGAAAAACCTGGTTCTATAAAATCGACAATGCAGAGCGTATATCGAAGCCAAGGAAAGGCACTAAACAACAACAACAACAAAGAATTAATTGAGGTCGATGAGCCTGTGGCTGTTTGGTTCAAGTTTGAGTGTGGAGAGAAGTGGAATGCAGGCATCAAATGTGCAAGGGCCGATTGGCCACTATCAATTATAAGAGGCAAACCAACTAATGATAATCAGAACAAATATTTTGTCATTTTTTCTCCAGAAACAAGGAATTATTTATGGGTTGATATGCTTCGTGTTCAATTAATTAATGAGTTTCCTCAACCCATAGCATATGAAACTCATCAAGATGGAATTGATATTGTACAAGACTTAAATATTGCGCGACAATTTATAATGCAAAAGCTTGCCGGTGACATGCTTCATCTTGTGCATCTAATTCATTATAATGCTTTGATAGAATCTGCTCGACATGTGATTGTTTGGAAGCAGTTTGGTATGGAAGCATATAATTGTCACACTTATTCAGAACTTGGAAGAATGGTTAAGAAGCTGCAAAATAACATAATGCAGCAATATATAAAGGCTAATTGGAAATTGCATTCCGATAAGTCTTGGGCTGAAATATGCAAGAAAGCAAATAATGCAGACGCAATAGAGCAACTTCAAGAGGAATTGTATCGTTCGATTTTATGGAAAGATGTTAGGGCTCTATGGAATGCACCCATGCAACCAAAATTGGACTATGAGTGGGAAACATGGAAGCATGATGTGATGAAATGCTTTGTTACATTTCCTTCATTTTGTAGCAATAATGGCACACATCAGCGCCATGCTTCAAGTTCTAACAATATGCGACAAGTATGCTCGGAGAATCATACAGAAGAAGCACAATGGTTATTTAGAGGTTATAGTTGTGCTCTTTGTTTTGATTATTTCACCTACAAGAAGCTTCTTGAAACTCATGTTCAAGAGAGACACCGTGTGCAATTTGAAGAACACCTTTTACTTTTACTATGTATACCTTGTGGTAGACATTTTGATAATACCGAGGAATTGCGCTTACATTTTATGTCAGCTCACCATGCAGAATTTAAGCTTTTGAAAGCTCGTGAGCAAGTATCTTTGTCTACCAGCGATGATTGTCTGTAA 1434 0.364 MEKLICMENSQCDIMKLDDESSDDSLLVMQVPTQVENEVQVEENVDFIGQVENQVQVQENDVNGQVENQVQVQENVNKVAVNPVDSEILSSNGLAIQIFEKPGSIKSTMQSVYRSQGKALNNNNNKELIEVDEPVAVWFKFECGEKWNAGIKCARADWPLSIIRGKPTNDNQNKYFVIFSPETRNYLWVDMLRVQLINEFPQPIAYETHQDGIDIVQDLNIARQFIMQKLAGDMLHLVHLIHYNALIESARHVIVWKQFGMEAYNCHTYSELGRMVKKLQNNIMQQYIKANWKLHSDKSWAEICKKANNADAIEQLQEELYRSILWKDVRALWNAPMQPKLDYEWETWKHDVMKCFVTFPSFCSNNGTHQRHASSSNNMRQVCSENHTEEAQWLFRGYSCALCFDYFTYKKLLETHVQERHRVQFEEHLLLLLCIPCGRHFDNTEELRLHFMSAHHAEFKLLKAREQVSLSTSDDCL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03831 477 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 10 381 - -
Trre16g03831 477 ProSitePatterns Zinc finger C2H2 type domain signature. 434 456 IPR013087 -
Trre16g03831 477 Pfam Zinc finger C2H2-type, 3 repeats 400 475 IPR040689 -
Trre16g03831 477 Gene3D Classic Zinc Finger 395 474 - -
Trre16g03831 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 432 460 IPR013087 -
Trre16g03831 477 SMART c2h2final6 398 421 IPR013087 -
Trre16g03831 477 SMART c2h2final6 432 455 IPR013087 -
Trre16g03831 477 ProSitePatterns Zinc finger C2H2 type domain signature. 400 421 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03831 Trre-Chr16 43287736 43292432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03831 382 474 C2H2 Transcription Factor Family AT2G23740 43.011 4.65e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03831 - - tpra:123922793 453.751