Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03820 ATGTTCTATCATCACAAGTCAAATCTTTATATTCTCATTATCATCATCACAATCTTCACTACAATAATAACTGCTGATCAAAACAAAAATAACTGCAATCGAAGATGCGGTGAACAAATTGTAAATTATCCGTTCGGATTCTCGGATGATTGCGAAATTAAACTTAACTGCAGCATCAACAAAGAACTCAAAATTGGTGAGTTAAAAGTTGAAGAAGTGAATTCTGATAGCATATTCATATCATTACCAGCAAAATGCAACCGTAGTACAAGTTTCATAGAGCCACTTTTCGGCAAAAACTTCGCTCCAACATGGAACAACACGTTCCTTGTACAGAAATGTAATTCAAATCTTAGTGGTTGTGTTATTCCACCTTCGATTTTCATTGGAACAAACATAAATGTTGAAGGTTGTGATGATAAAACAAGAAGTGATAACATCACTTGCTTTACGCAATCGCAGCGTAAGAGAACGCGCGACCGCGAGGATGTTCTTACGGTTGATGATTGGAAAAGAAATGGATGCAAATTCTTGTTTTCTGCTATTGCTGTTGATAGCAGTAAAATCAAAGAGGTACCAATTCGGTTTCAGGTGATTGAGTTGGGGTGGTGGCTAGAAGGGACTAGTGGATGTTCTGATGATGCTAATTATACGGGGGTTCATCTTGACGGAGATAAACAGGGTTTCCGGTGTCGTTGCCGTGAAGGTTTCGTCGGAGATGGATTTGTCAACGGTATTGGTTGCCGGAGAGTTTCTCATTGCAGACCTTCAACATTTGGGTCTAGCAAATGTGGAAAAACACTCAGAATTGGTGTACTTATTGGAGTGATCCTTGTTGGAGCCTCCGTGACGGCTGCCCTGGCTATGCTATGCTACTTCGCCAAGCGCCGTTCCACATGGCTGACAAAACAATTGACGGTAAAGCGCCTTTTAAGAGAAGCTGCAGGCAACTACATTGTTCCACTCTACCCTTACAAAGAAATAGAAAAAGCCACAAATTTTTTCTCAGAGAAACACAGGCTAGGAACCGGTGCTTACGGCACGGTTTATGCAGGAAACCTTCACAATGATGAATTGGTTGCTATAAAAAAGATCAGGTATAGAGACACCAACAGTGTTGACCAAGTCATGAATGAGATCAAGCTCCTTTCTTCGGTTAGTCATCCGAATTTAGTTCGACTCTTAGGCTGCTGCATAGAAAAAGGAGAGCATATACTTGTTTATGAGTATATGGCAAATGGAACATTATCTCAACATTTACAACGAGAAAGAGGCGGAACACTTCCTTGGACAATAAGACTCACCATTGCCTCTGAAACTGCTAATGCTATAGCATTTCTCCACTCTTCAAATCCTCCAATTTATCATAGAGACATAAAATCTAGTAACATACTTTTGGACTTTAGCTTTCAATCAAAAGTAGCGGATTTCGGACTTTCTAGGCTAGGCATGACAGAAACATCGCATATCTCAACCGCGCCACAAGGGACACCGGGTTATGTTGATCCACAATACCATCAAAACTTTCACCTTTCTGATAAAAGTGATGTATATAGTTTCGGAGTTGTTTTGGTAGAGATAATAACGGCAATGAAAGTGGTTGATTTCGGTAGACCTCAGAGTGAGATTAATTTAGCAGCACTTGCTGTTGAAAAAATTAGGAAAGGTCGTATCGACGATATCATAGATCCTTTCCTTGATCTAAATAGGGATGCTTGGACACTCTATTCTGTTAACAAGGTAGCCGAGCTTGCATTTAGATGCCTCGCTTTTCATAGCGAAGCGAGGCCTAGTATGATTGAAGTGGCTGAGGAGCTAGATAATATCAGACGCAGTGGATGGGCGACAATGGAGGAAACTATATGCATGGGATCATCAGTTGGATCCGCCTGTTCATCTCCTCGTAATAACGGAAATGAGAATTTAGTTTCAAAGAATGAGATATCGGTCGTTCCACAAAAGACTAATAGTTTTTTGCATCCAATAGAGGAGGTAAAGGATAGTTCTCCTGTATCTATGCATGGTACTTGGTCAAGTAGACCTAGTTCACCTTCAACAAACAGCTTATTGGGAAATGTTGTTCAGTGA 2088 0.4047 MFYHHKSNLYILIIIITIFTTIITADQNKNNCNRRCGEQIVNYPFGFSDDCEIKLNCSINKELKIGELKVEEVNSDSIFISLPAKCNRSTSFIEPLFGKNFAPTWNNTFLVQKCNSNLSGCVIPPSIFIGTNINVEGCDDKTRSDNITCFTQSQRKRTRDREDVLTVDDWKRNGCKFLFSAIAVDSSKIKEVPIRFQVIELGWWLEGTSGCSDDANYTGVHLDGDKQGFRCRCREGFVGDGFVNGIGCRRVSHCRPSTFGSSKCGKTLRIGVLIGVILVGASVTAALAMLCYFAKRRSTWLTKQLTVKRLLREAAGNYIVPLYPYKEIEKATNFFSEKHRLGTGAYGTVYAGNLHNDELVAIKKIRYRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEKGEHILVYEYMANGTLSQHLQRERGGTLPWTIRLTIASETANAIAFLHSSNPPIYHRDIKSSNILLDFSFQSKVADFGLSRLGMTETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFGRPQSEINLAALAVEKIRKGRIDDIIDPFLDLNRDAWTLYSVNKVAELAFRCLAFHSEARPSMIEVAEELDNIRRSGWATMEETICMGSSVGSACSSPRNNGNENLVSKNEISVVPQKTNSFLHPIEEVKDSSPVSMHGTWSSRPSSPSTNSLLGNVVQ 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03820 695 SUPERFAMILY Protein kinase-like (PK-like) 317 606 IPR011009 -
Trre16g03820 695 MobiDBLite consensus disorder prediction 671 695 - -
Trre16g03820 695 FunFam Wall-associated receptor kinase-like 14 302 410 - -
Trre16g03820 695 ProSiteProfiles Protein kinase domain profile. 335 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03820 695 CDD STKc_IRAK 341 609 - -
Trre16g03820 695 Gene3D Transferase(Phosphotransferase) domain 1 411 623 - -
Trre16g03820 695 FunFam Wall-associated receptor kinase-like 20 411 619 - -
Trre16g03820 695 ProSitePatterns Protein kinases ATP-binding region signature. 341 364 IPR017441 GO:0005524
Trre16g03820 695 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 678 IPR044652 GO:0004672
Trre16g03820 695 ProSitePatterns Serine/Threonine protein kinases active-site signature. 454 466 IPR008271 GO:0004672|GO:0006468
Trre16g03820 695 Gene3D Phosphorylase Kinase; domain 1 297 410 - -
Trre16g03820 695 Pfam Protein kinase domain 336 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03820 695 MobiDBLite consensus disorder prediction 667 695 - -
Trre16g03820 695 SMART serkin_6 335 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03820 Trre-Chr16 43101233 43106395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03820 5 693 Receptor kinase-like Gene Family AT2G23450 53.780 0.0 701
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre16g03820 Pkinase 5.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03820 - - gmx:100810861 994.956