Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03809 ATGTCATCTTCGGACTCTGGTGACTGCCGCCGATCAACCAAACCTCAAAACCGTCCAGGAGTACCTACACCTGAGCAAGAGAGTCTCCCATGTCCTCGTTGTGATTCAACCAACACTAAATTTTGTTACTATAACAACTACAACTACTCTCAGCCACGCCATTTCTGTAAGGGTTGTCGCCGCTACTGGACACAGGGAGGTACTCTCCGTGACATCCCAGTCGGCGGAGGTACTCGCAAAAATGCCAAGCGCTCCCGAACTCAGCACATTGCGGCGGTGACCTCTTCTTCTTCCTCTGTTGTGACTTCTGCACCGGAGCACCACCAGTATCAATCAATGTCACCCATCTCTGCCGTACACGGTGGCTCTGTTCCGTACTGTGGTAGTGTTGATGGTGATGGAAAACAGAATATGAGTGTTTCTGGGAGCTTCACTTCACTGCTGAACAATAATACTCACGGCAACTCTGGCTTTCTTGCATTAGGCGGATTTGGGTTTGGGCTTGGACAAGGACTTGAAGAAATGGGCTTTGGGATTGGGAGAAGTGGTTGGGCTTTTCCGGGAATGGTGGATGGATCAAACATTGGTGGTGTGCCTGTTGTGTCTTCAAACTTATGGCAGTTAGAAAATGGTGAAAGTGGTTTTGTTGGTGGTGACTGTTTCTCTTGGCCTGGACTTGCAATTTCAACTCCTGGAAATGGTCTCAAATGA 711 0.488 MSSSDSGDCRRSTKPQNRPGVPTPEQESLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRSRTQHIAAVTSSSSSVVTSAPEHHQYQSMSPISAVHGGSVPYCGSVDGDGKQNMSVSGSFTSLLNNNTHGNSGFLALGGFGFGLGQGLEEMGFGIGRSGWAFPGMVDGSNIGGVPVVSSNLWQLENGESGFVGGDCFSWPGLAISTPGNGLK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03809 236 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 162 IPR045174 GO:0003700|GO:0006355
Trre16g03809 236 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Trre16g03809 236 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Trre16g03809 236 MobiDBLite consensus disorder prediction 1 30 - -
Trre16g03809 236 Pfam Dof domain, zinc finger 27 83 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03809 Trre-Chr16 42961631 42962341 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03809 1 236 C2C2-Dof Transcription Factor Family AT3G50410 50.000 2.19e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Trre16g03809 zf-Dof 1.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03809 - - tpra:123881632 379.793