Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03788 ATGGCTATGATTCTAGATGCTGTTATTGGGAAATTAGTTGATGAACTAATGAGTTCAGTAGTTGAAATGAAAGACAGGGCTTTGAAATTCAAACCAACACTAGAACGGTTAGAAACAACTCTGAAATCATTAGCACCATTGATCAAACAAATAGATGAATATAACAAGAAACTCGATCGATCGGCTAAAGAAACAGATAGACTAATCAAACAAATGAAAGAAGGAAAAGAACTTGTTCTTAAATGTTCTGATAAAGAACAAATTAAGTGGTGGAACTGTTGTTACAAAAAAGCAGAATATCAAGAAAAACTTGAAGTATTGGATGAAGATATTAGGAGATTCTTTGAGCTTGATTTGAGAGCTCAAGATATGAGAAATGGGTTGGAAGCACTTGTGGAGATTAAGGAGTTTAGAGCTGAATTTAGAAGTGTTGGTTTGAGGAATGAGAGGATTGAATTAAGAGGTGTTTGTTTACCACCTCAACCCCCTGGTTTTACTGTTGGATTAGATGGTCCTTTGAATGAGTTAAAGATGAAATTGTTGAAGGATGAGGTTAGTGTTTCTGTTGTTACTGTTACCGGTTCCGGTGGTTCGGGGAAATCTACTTTGGCTAAAAGGTTTTGTTGGGATGAACAAGTAAAAGGTAAATTCAACGAAAATATCTTCTTCATTACCTTTGCAAAAGCACCAAAGCTGAATGCTATAGTGCAGAAAATCTATCAACACACTGGTTACCCAGTTCCGGAGTTTCAAAGCGATGAAGACACATTTAACCAATTGGAATATTTGATGAAACAAATTGTGAAAAAAGGTCCAATTTTGTTGGTCTTAGACGATGTTTGGCTGGAATCAGTATCACTTGTTGATAATTTTGTGTTTGAGATTCCAAACTACAAGATTTTGGTGACATCAAGATTTGCAATTGGAAGATTTGGCCATCCATTTGTCTTGAAACCTCTTTCTGAAGCACATGCCATAAATCTATTTAAGCATTCAGCATCTTTAACTAAGACCAGCTCAGATATTCCTGATGATGTTGTCAAAGAGATAGTAAGAGGCTGTAGTGGTTCTCCCTTAGCACTTCGAGTAAGCGGCAGATCACTAAGTAACGAACACCAGATAGTTTGGCTTAACCGAGCGAAAGCATTATCATCTGGTAGTTCGATTCTTGATTCTAGCAAAGACGTGCTTTCTTGTCTCCAAAAGAGCTTAGATGTGTTGGATCCGAAGTCCATGGAATGTTTTAGGGACTTAGGCTTATTTCCTGAAGACCAGAGGATCCCTGCTGCTGCCCTTATTGATATGTGGGCAGAATTAAGGAATGATGATGAAGCAACTGCAATGGAGAGAATTTATAACCTAGTTAACCTTAACTTGGCTGATATTATTGTGACAAGGAAAGTTGCAAGTGGCGCGATTGATTACAACTATCACTATGTTACACAATATGGTCTTCTTAGGGATCTAGCCATCCGCAATACTGATCAAGAGGCAGAAGATAAGAGGAGTAGACTCATAATTGACACAAATGCAAATAATCTTCCCTCATGGTGGACTTCAGAGAATGAGTATCACATTGCAGCTCGCATATTATCCATATCAACTGATGAAACATTCACTACAAAATGGTGCAACTTGCAGCCAACTGAAGTTGAGGCATTAGTGTTAAACCTTAGAGAAAAGAAGTGTACACTACCAATGTTCATGAAGAAAATGAACAAACTAAAAGTTTTGATAATCACAAACTATGACTTCTATCAAGCTGAACTCGATAATTTTGAGCTGCTCAATCATCTTTTGAGTCTCAAACGAATCAGATTCGAGAAAATTTCGGTTCCTTCCCTAGGAAAATCCATAGTTCAATTGAAGAATCTGAAGAACTTTTCATTTTTTATGTGCAATGTGAATAAAGCATTTGAAAATTGCACTATCCAACATTCAGAAATACTACCAAGTTTAGTGGAGATGAATTTTGACTATTGTGATATGGTAGAATTGCCAAATGTGTTTTCCAACATTGTATCCTTAAAGAAGCTTAGTATCACAAATTGTCATAAGCTTTGTGCACTTCATGAAGGAATTGGAAATTTGGTTAATTTGGAATCACTAAGGCTAAGTTCATGTAGTGATTTATTGGAGTTACCAAATTCAATTTCAAATCTTCATAGGCTAAAGTTTCTTGACATTTCAGGATGCATAAACCTAGGTCAATTACCTGAAAATATGTGTGAGTTGGAGAAATTAGAAAAACTCAACATGAGAGGTTGTTCAAGTATAAGTGAATTGCCATCATCAATTATGGAACTTAAGGGGTTAAAGCATGTGATATGTGATGAAGAGACTGCTGAAAAATGGGAACCTTTTAGAACTATTCTTGGTGATCTAAGGATAGAGGTTGTTCAAGAAGATTTCAATTTAAATTTTCTTTACAATTAA 2436 0.3596 MAMILDAVIGKLVDELMSSVVEMKDRALKFKPTLERLETTLKSLAPLIKQIDEYNKKLDRSAKETDRLIKQMKEGKELVLKCSDKEQIKWWNCCYKKAEYQEKLEVLDEDIRRFFELDLRAQDMRNGLEALVEIKEFRAEFRSVGLRNERIELRGVCLPPQPPGFTVGLDGPLNELKMKLLKDEVSVSVVTVTGSGGSGKSTLAKRFCWDEQVKGKFNENIFFITFAKAPKLNAIVQKIYQHTGYPVPEFQSDEDTFNQLEYLMKQIVKKGPILLVLDDVWLESVSLVDNFVFEIPNYKILVTSRFAIGRFGHPFVLKPLSEAHAINLFKHSASLTKTSSDIPDDVVKEIVRGCSGSPLALRVSGRSLSNEHQIVWLNRAKALSSGSSILDSSKDVLSCLQKSLDVLDPKSMECFRDLGLFPEDQRIPAAALIDMWAELRNDDEATAMERIYNLVNLNLADIIVTRKVASGAIDYNYHYVTQYGLLRDLAIRNTDQEAEDKRSRLIIDTNANNLPSWWTSENEYHIAARILSISTDETFTTKWCNLQPTEVEALVLNLREKKCTLPMFMKKMNKLKVLIITNYDFYQAELDNFELLNHLLSLKRIRFEKISVPSLGKSIVQLKNLKNFSFFMCNVNKAFENCTIQHSEILPSLVEMNFDYCDMVELPNVFSNIVSLKKLSITNCHKLCALHEGIGNLVNLESLRLSSCSDLLELPNSISNLHRLKFLDISGCINLGQLPENMCELEKLEKLNMRGCSSISELPSSIMELKGLKHVICDEETAEKWEPFRTILGDLRIEVVQEDFNLNFLYN 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03788 811 Pfam NB-ARC domain 172 384 IPR002182 GO:0043531
Trre16g03788 811 Coils Coil 97 117 - -
Trre16g03788 811 SUPERFAMILY RNI-like 551 775 - -
Trre16g03788 811 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 7 140 IPR008808 -
Trre16g03788 811 Gene3D Ribonuclease Inhibitor 493 792 IPR032675 -
Trre16g03788 811 Gene3D - 404 486 IPR036388 -
Trre16g03788 811 Gene3D - 153 309 IPR027417 -
Trre16g03788 811 PRINTS Disease resistance protein signature 354 368 - -
Trre16g03788 811 PRINTS Disease resistance protein signature 267 281 - -
Trre16g03788 811 PRINTS Disease resistance protein signature 189 204 - -
Trre16g03788 811 PRINTS Disease resistance protein signature 719 735 - -
Trre16g03788 811 ProSiteProfiles RPW8 domain profile. 1 153 IPR008808 -
Trre16g03788 811 Coils Coil 51 71 - -
Trre16g03788 811 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 2 809 IPR039203 GO:0050832
Trre16g03788 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 418 IPR027417 -
Trre16g03788 811 Gene3D - 320 403 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03788 Trre-Chr16 42668417 42673464 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03788 611 769 WRKY Transcription Factor Family AT5G45050 29.012 1.03e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03788 - - mtr:25502906 1191.41