Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03787 ATGGGAGAAACAACAGAATTAGATGCTATTACATCACAGCTTCAACAAACATACAAACAAGTTCAACATGACCAAACATCCATGCGATTATTTAACTCAACTCTCAAAGATTTGTCTCCAATTGTTCAACAAATCAACCAATATAACGAACAATTGAACCCACCTAGAGAAGAAATCAAGACTCTCATCAAACAAAATCAAGCACAAGAACAAAAGGTTGACCAAAAGAATCTTTGTTCTTGGCTTCAACTGTGTCTTGATGGAATTTTACATAAGAAGGAGAAAGATGATTTTGATTCCTCTTTTGCTGATGACAAACAAAAAATTATGGCAAAAGATGTTAAGGATACGCTTTATAAGTTGAAAGAAGTTCTTGAGATTCTCAATAAGGAGAATTTTGAGAAGAAATTAAGTGGATCTGGAGGACCAATTTTTAAGGGTCCTTTTGGTGTTCCTGAAAATTCTGAATTTACTGTTGGTATGGATTTTCAATTGATGAAGTTGAAGACGGAACTTCTCAAAGACGGAAAATCTACCATATTGGTGACTGGAATGGGTGGATTGGGAAAAACCACTTTGGCTAAACAGCTATGTAGGGATGACCAAGTTAAGGGTAAATTCCGGGGAAATATTTTATTTGTCGTCTTCTCAAAAACACCCCAGTTGAAGACTATTGTAGAGAGACTTTTTGAACATTGTGGATATCCAATGCCACCAGAGTTTCAAAGTGATGAAGATGCAGTTAATAAATTGGGACTTTTGCTGAAGAAAATCGAGGGAAGTCCAATATTGTTAGTCTTGGACGATGTTTGGCCTGGATCAGAAGACCTCGTAGAGAAATTTCAATTCCAGATATCAGATTATAAAATTTTAGTGACTTCAAGGTTTGCAATATCTAGATTTGACAAAACCTTTATCCTAAAGCCTCTTGTTCACGAAGACGCAGTAACCCTTTTCCGTCACTACATAGAGTTGGGAAAAACTCGTTCAAATATTCCTGACAAAGATCTTATCCAAAAGGTTGTAGAAAATTGCAAGGGTTTACCTCTAGCCATTAAAGTGATCGCAACATCACTGAGTAATCGGCCATACGAGTTGTGGGAAAAGATTGTGAAGGAACTTTCTCAAGGTCGTTCTATACTTGATTCTAATACGGAATTACTTACTCGCCTCCGCAAGATCTTGGATGTTTTGGAAGATAATCCCATTAACAAGGAGTGCTTCATGGACCTAGCTTTATTCCCTGAAGACCAGAGAATTCCTGTTGCTGCTCTGATTGATATGTGGGCAGAGTTGTATGGACTAGATGACGACGGAATAGAAGCAATGAACATCATCAACAAATTAGACTCTATGAATCTAGCTGATGTCTTAGTAGCTAGGAAAAATTCAAGTGACACAGAAAATTACTACTACAATAACCACTTCATCGTCCTTCATGATCTACTAAGAGAGCTTGGAAATTATCAAAACACCCAAGGACCTATTGAACAAAGAAAAAGACTTCTTATTGACATTAATGAATACAAACGTGATCAGTGGCTTGCGGAGAAGCAGCGAGGCACAATGGTCCGCATATTGTCCAAATTTGTTAAATTGTGTGTCAAACCAAAGCTTCAGCAGGTCCCAGCCCGTACATTGTCTATATCAATTGATGAAACTTGTGCTTCAGATTGGTCTCAAGTTCAACCAGCTCATGCCGAGGTTCTGATTTTAAATCTTCAAACCAAGAAGTACTCATTTTCAGAGTTGATGGAGGAAATGAGCAAACTAAAAGCTCTCATAGTCATAAATCACGGTTTCCGTCCTTCTGAACTGAACAACTTTGAGCTACTTAGCTCTTTATCCAACCTGAAAAGAATTAGGCTAGAGCGGGTTTCTGTTCCTTCCTTTGGCACATTCAAGACTCTGAAAAAATTATCCCTCTACATGTGTAATACAAGACTAGCTTTTGAAAAGGGTAGCATCCAAATTTCCGATTCATTTCCAAATTTAGAAGATTTGAGTATTGACTATTGCAAGGATTTGATGGCATTGCCTAGTGGGGTGTGTGATATTCCCTCATTAAAGAAGCTCAGTATTACTAATTGCCATAAGCTTTCTTCGCTGTCCAAAGATATTGGAAATTTGGAGAATTTGGAACTCTTGAGCCTGATTTCCTGCACTGATTTGGTAGAGCTCCCAGATTCTATTGGAAGGCTTTTAAATCTACGACTACTTGACATTTCCAACTGCTTAAGCCTTTCAAGTTTACCCGAGGACATTGGCAATCTGTGTAATCTAAGAAATCTCTACATGACTAGTTGTGCAAGCTGTGAATTGCCACTATCAGTTGTCAATCTTGAAAATTTAAAGGTGATATGCGATGAAGAAACAGCTGCTTCATGGGAATCTTTCCAATCTATGATGTCCAATTTAACTATAGAGGTTCCTAAAGTTGAAGTCAATTTAAATTGGCTTCACGCAATTCGCTCTTAA 2478 0.3765 MGETTELDAITSQLQQTYKQVQHDQTSMRLFNSTLKDLSPIVQQINQYNEQLNPPREEIKTLIKQNQAQEQKVDQKNLCSWLQLCLDGILHKKEKDDFDSSFADDKQKIMAKDVKDTLYKLKEVLEILNKENFEKKLSGSGGPIFKGPFGVPENSEFTVGMDFQLMKLKTELLKDGKSTILVTGMGGLGKTTLAKQLCRDDQVKGKFRGNILFVVFSKTPQLKTIVERLFEHCGYPMPPEFQSDEDAVNKLGLLLKKIEGSPILLVLDDVWPGSEDLVEKFQFQISDYKILVTSRFAISRFDKTFILKPLVHEDAVTLFRHYIELGKTRSNIPDKDLIQKVVENCKGLPLAIKVIATSLSNRPYELWEKIVKELSQGRSILDSNTELLTRLRKILDVLEDNPINKECFMDLALFPEDQRIPVAALIDMWAELYGLDDDGIEAMNIINKLDSMNLADVLVARKNSSDTENYYYNNHFIVLHDLLRELGNYQNTQGPIEQRKRLLIDINEYKRDQWLAEKQRGTMVRILSKFVKLCVKPKLQQVPARTLSISIDETCASDWSQVQPAHAEVLILNLQTKKYSFSELMEEMSKLKALIVINHGFRPSELNNFELLSSLSNLKRIRLERVSVPSFGTFKTLKKLSLYMCNTRLAFEKGSIQISDSFPNLEDLSIDYCKDLMALPSGVCDIPSLKKLSITNCHKLSSLSKDIGNLENLELLSLISCTDLVELPDSIGRLLNLRLLDISNCLSLSSLPEDIGNLCNLRNLYMTSCASCELPLSVVNLENLKVICDEETAASWESFQSMMSNLTIEVPKVEVNLNWLHAIRS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03787 825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 411 IPR027417 -
Trre16g03787 825 Gene3D - 391 488 IPR036388 -
Trre16g03787 825 Gene3D - 310 389 IPR042197 -
Trre16g03787 825 Coils Coil 111 131 - -
Trre16g03787 825 Gene3D Ribonuclease Inhibitor 562 819 IPR032675 -
Trre16g03787 825 Gene3D - 148 302 IPR027417 -
Trre16g03787 825 PANTHER PLANT BROAD-SPECTRUM MILDEW RESISTANCE PROTEIN RPW8 10 820 IPR039203 GO:0050832
Trre16g03787 825 PRINTS Disease resistance protein signature 179 194 - -
Trre16g03787 825 PRINTS Disease resistance protein signature 345 359 - -
Trre16g03787 825 PRINTS Disease resistance protein signature 732 748 - -
Trre16g03787 825 PRINTS Disease resistance protein signature 257 271 - -
Trre16g03787 825 Pfam NB-ARC domain 166 395 IPR002182 GO:0043531
Trre16g03787 825 SUPERFAMILY RNI-like 581 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03787 Trre-Chr16 42615244 42621338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03787 182 806 WRKY Transcription Factor Family AT5G45050 23.994 4.93e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03787 - - mtr:11409724 1147.88