Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03774 ATGGATCGGGCTGCTATGACTGTTGGACCGGGTATGGATATGCCGATCATGCACGATAGTGACCGTTACGATCTTGTTCGTGATATCGGCTCCGGAAATTTCGGTATTGCTAGATTGATGCAAGATAAACAGACTAAGGAACTTGTTGCTGTCAAATATATTGAACGTGGTGATAAGATTGATGAAAATGTCAAAAGAGAAATCATTAATCACAGGTCTCTGAGACACCCTAACATTGTTAGGTTTAAGGAGGTTATTTTAACACCTACTCATCTTGCTATTGTAATGGAGTATGCATCTGGAGGGGAACTTTTCGAGCGAATCAGCAACGCTGGACATTTTTCTGAGGACGAGGCCCGTTTCTTCTTTCAACAACTCATATCTGGGGTCAGCTACTGCCATGCAATGCAAGTATGTCACCGGGACCTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAACTCCCCGTCTGAAGATATGTGATTTTGGTTACTCCAAGTCTTCAGTGCTTCATTCACAACCAAAGTCAACTGTGGGAACTCCGGCATATATTGCTCCAGAAGTATTACTCAGACAAGAGTATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGAGTAACCTTATACGTGATGCTAGTGGGATCATATCCCTTTGAAGATCCCAATGAGCCAAAGGATTTCCGGAAGACAATACAGAGAGTACTCAGTGTCCAGTATTCCATTCCAGATAACGTTCAAATATCTCTAGAGTGTCGCCACCTTATCTCAAGGATCTTTGTTTTTGACCCTGCAGAGAGAATTACCATGCCTGAAATCTGGAAACATAAATGGTTTCTGAAGAATCTACCCATGGACCTGATGGATGAGAAGATAATGGGAAACCAATTTGAAGAGCCTGAACAACCCATGCAGAGCATTGATACAATCATGCAGATAATTTCAGAAGCTACTATACCACCAGCTGGAACCTGTTCTTTAGACCAGTTTATGCCAGATAACATTGATGTGGATGATGACTTTGATGATTTGGAATATGAATCCGAGCTCGATATAGATAGCAGTGGGGAGATAGTCTATGCCATGTACTAA 1092 0.4203 MDRAAMTVGPGMDMPIMHDSDRYDLVRDIGSGNFGIARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERISNAGHFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPTPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGSYPFEDPNEPKDFRKTIQRVLSVQYSIPDNVQISLECRHLISRIFVFDPAERITMPEIWKHKWFLKNLPMDLMDEKIMGNQFEEPEQPMQSIDTIMQIISEATIPPAGTCSLDQFMPDNIDVDDDFDDLEYESELDIDSSGEIVYAMY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03774 363 PANTHER SERINE/THREONINE KINASE 22 301 - -
Trre16g03774 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Trre16g03774 363 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03774 363 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03774 363 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Trre16g03774 363 CDD STKc_SnRK2 22 278 - -
Trre16g03774 363 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Trre16g03774 363 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Trre16g03774 363 SUPERFAMILY Protein kinase-like (PK-like) 15 319 IPR011009 -
Trre16g03774 363 FunFam Serine/threonine-protein kinase SRK2E 99 287 - -
Trre16g03774 363 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre16g03774 363 FunFam Serine/threonine-protein kinase SRK2E 14 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03774 Trre-Chr16 42499201 42503143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03774 16 308 CBL-interacting serine-threonine protein kinases AT4G24400 40.391 2.24e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre16g03774 Pkinase 1.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03774 K14498 - gmx:100806949 655.21