Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03772 ATGAAGGTGTTTTTGAAATTTTTAATTGATGAAGATGATGAGGAAGATGCTCGTGAAGTAGCGTTGAAGTTGAAGAAATTTGAGCACTTCTCACCATCTAAAAGGGATAAACATATCTTGTCGCACTTCCCACCATCTATCACAATGTCACGGATTGCAAGAGAGATTACCCATCGGTGTGCAGCATGCAAGCAACAACATCGAAGATGCGATTCATCCTGTGATTTAGCTCCATTCTTTCCACCGGACAACCAACAACGTTTCAGAGCTGTACACGAAGTATTCGGAAGGAGCAATGTGTCCAAGATGTTGCAGGAAATAGACCCAACGCTACGTGACAACACAGTTGATTCGTTAGTGTTTGAGGCTGAGACTCGTCTGAGGGACCCAATTAATGGGTATTTGACTGATGCTCACAATCTTGAGCATCGGTTGATGGAAATTCAACAAGAAATCACCAATACGAAGAGCGAACTCACAAAATTCCTCAGTCCCGAGGTAATTCAAACAGTGATGAATAATCCTAATTGTTTCGGCTTTGAGCCTCGCGACAATCAAAATTCACCTGCTCAATTGACTGCCGCTCAACATGAACAGTTAGAAGTGCTGCGACAAAGAATTAATAGGTTTGACACGGGGTTCAACTTTGTTGATGGTGATGGGTTTGGGCAACATGATATGATTAATGGTGCTAAATGA 699 0.422 MKVFLKFLIDEDDEEDAREVALKLKKFEHFSPSKRDKHILSHFPPSITMSRIAREITHRCAACKQQHRRCDSSCDLAPFFPPDNQQRFRAVHEVFGRSNVSKMLQEIDPTLRDNTVDSLVFEAETRLRDPINGYLTDAHNLEHRLMEIQQEITNTKSELTKFLSPEVIQTVMNNPNCFGFEPRDNQNSPAQLTAAQHEQLEVLRQRINRFDTGFNFVDGDGFGQHDMINGAK 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03772 232 ProSiteProfiles LOB domain profile. 58 159 IPR004883 -
Trre16g03772 232 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 58 182 - -
Trre16g03772 232 Pfam Lateral organ boundaries (LOB) domain 59 156 IPR004883 -
Trre16g03772 232 Coils Coil 131 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03772 Trre-Chr16 42458927 42460398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03772 60 203 AS2 family AT5G66870 38.776 1.71e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g03772 LOB 1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03772 - - mtr:11411349 162.925