Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03769 ATGGTGAACCCTAGAGTCTACTTCGACATCAGCATCGGTGGCGAATTAGAGGGTAGAATCGTCATTGAACTCTTCAACGACGTCGTTCCCAAAACCGCCGAAAATTTCCGAGCACTCTGCACCGGTGAAAAAGGAATCGGTCCAAACACCGGTGTTCCTCTCCATTTCAAGGGTTCATGTTTTCATCGTGTCGTCAAAGGCTTCATGATTCAAGGTGGTGACATTTCCGCTGGTGATGGAACCGGAGGTGAATCAATTTACGGTACGAATTTCGATGATGAAAATTTTGACCTAAAACATGAACGGAAAGGGATTTTATCTATGGCGAATACTGGTCCTAATACGAATGGTTCTCAGTTTTTCATTACTACTACTAGAACTCCTCATTTGGATGGGAAGCATGTGGTTTTTGGGAAAGTTGTTAAAGGAATTGGGGTTGTTAGGTCTGTTGAACTCGGTGCTACCGGAGAGGATGATCGTCCGGAACAAGATGTTGTTATTGTTGATTGTGGTGAACTTGCTGAAGGAGAGGATGAAGGTGTTATTAACTTTTTTAAAGATGGTGATACTTTTGCTGATTGGCCTGTTGATCTTGATACCAAATCGGAGGAGCTTGAGTGGTGGATGAATGCTGTTGATTCTATCAAAAGTTTCGGGAATGAACATTACAAGAAGCAAGATTATAAGATGGCTATCAAAAAGTATCGCAAGGCTTTGCGCTATTTGGACATGTGTTGGGAGAAAGATGGTGTTGACCAAGATAAGAGCACTGCTTTAAGGAAGACAAAATCTCAAATCTTTACCAACAGTTCAGCCTGTAAATTGAAATTAGGTGACCTGAATGGAGCTTTACTGGATGCAGACTTTGCAATGCATGATGGAGATAATGCAAAAGCTCTGTTTCGCAAAGGCCAGGTGTATATGTTACTCAATGACCTAGATGCCGCTCTTGAAAGCTTCAAGAAAGCATTAGAATTGGAGCCAAATGATGGAGGGATCAAAAGAGAGTATGCAATTTGCAGGAAGAAGGTTGCTGATAGACATGATAAAGAGAAAAAAGCCTATTCTAAGATGTTCAATTAG 1083 0.4146 MVNPRVYFDISIGGELEGRIVIELFNDVVPKTAENFRALCTGEKGIGPNTGVPLHFKGSCFHRVVKGFMIQGGDISAGDGTGGESIYGTNFDDENFDLKHERKGILSMANTGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGIGVVRSVELGATGEDDRPEQDVVIVDCGELAEGEDEGVINFFKDGDTFADWPVDLDTKSEELEWWMNAVDSIKSFGNEHYKKQDYKMAIKKYRKALRYLDMCWEKDGVDQDKSTALRKTKSQIFTNSSACKLKLGDLNGALLDADFAMHDGDNAKALFRKGQVYMLLNDLDAALESFKKALELEPNDGGIKREYAICRKKVADRHDKEKKAYSKMFN 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03769 360 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Trre16g03769 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Trre16g03769 360 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 Pfam Tetratricopeptide repeat 297 330 IPR001440 GO:0005515
Trre16g03769 360 SUPERFAMILY Cyclophilin-like 1 175 IPR029000 -
Trre16g03769 360 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Trre16g03769 360 CDD cyclophilin_ABH_like 4 171 - -
Trre16g03769 360 Gene3D Tetratricopeptide repeat domain 206 360 IPR011990 GO:0005515
Trre16g03769 360 ProSiteProfiles TPR repeat region circular profile. 297 330 - -
Trre16g03769 360 FunFam peptidyl-prolyl cis-trans isomerase D 210 360 - -
Trre16g03769 360 Gene3D - 1 179 IPR029000 -
Trre16g03769 360 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Trre16g03769 360 SMART tpr_5 212 245 IPR019734 GO:0005515
Trre16g03769 360 SMART tpr_5 297 330 IPR019734 GO:0005515
Trre16g03769 360 ProSiteProfiles TPR repeat profile. 297 330 IPR019734 GO:0005515
Trre16g03769 360 SUPERFAMILY TPR-like 205 358 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03769 Trre-Chr16 42429186 42432705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03769 17 170 U-box Gene Family AT5G67530 43.871 3.16e-33 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03769 K05864 - gmx:100803839 600.127