Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03741 ATGTTGCGGGAAATAGACCCAACGCTACGTCAAAACACAATTGACTCGTTAGTATTTGAAGCTGAGACTCGTCTGAGGGACCCTATTAATGGGTATTTGAGTGATGCTCACAATATGGAACATCGGTTGATGGAAATTCAACACAAAATCAACAATGTGAAGAGTGAACTCAACAAATACCTCACTCCCGAGGTCATTCAAATTGTGATGAATAATCCTAATTGTTTCGGCTTTGAGCCTAGCGACAATCAAAATTCAACTGCTCAGTTGACTGCCGCTCAACACGAACAGTTAGAACTACTGCGACAAAGAATTAATAGGTCCGACATGGGGTTCAACTCTATTGATGGTTATGGGTTTGGGCAACACGATATGATTAATGGTGCTAAATGA 393 0.4097 MLREIDPTLRQNTIDSLVFEAETRLRDPINGYLSDAHNMEHRLMEIQHKINNVKSELNKYLTPEVIQIVMNNPNCFGFEPSDNQNSTAQLTAAQHEQLELLRQRINRSDMGFNSIDGYGFGQHDMINGAK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03741 130 ProSiteProfiles LOB domain profile. 1 57 IPR004883 -
Trre16g03741 130 Coils Coil 36 56 - -
Trre16g03741 130 Pfam Lateral organ boundaries (LOB) domain 1 54 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03741 Trre-Chr16 42065744 42066136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03741 1 101 AS2 family AT5G66870 29.808 6.79e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre16g03741 LOB 3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03741 - K09093 lang:109339552 63.1586