Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03724 ATGAAAATCAATCCAAAAGAATCTAAGCATGAGAAGAGAATCGTCCAATCTCATGCAGGAAGTAGCTTTGACAATCTTAACAAGAGAAGCAATGATTTCTATGAAAAAGTGATGACAAATTTTGATTCGGATAAGAACTTCTTCGCATGTATTCTCCAAAAGTCATACATTGAGAGAGATGTCTTGGTGATACCAATTGAATTTGGTAAGACACATCTACAAAGGATGGTAGGAAGAAATGTTACCCTTTTTGTTGACAAAGATAGAACATGGAATGTTGATTTGAAGCTCATTTCAAATAAACAATTTACACTAAGTGGTGGTTGGAGTAAATTTCGTGCTCACTATAATTTGAAAATTGGTGATGTTTGTGTTTTTTTATTAAACAAATGCAAAGAAACGGTTTCATTCCAAGTTGTTATTTTCTCTCTCGAAAAGGACATGAACACCTCCTATTTTGAAGGGTATTGTGAAGAAATGTGA 483 0.3333 MKINPKESKHEKRIVQSHAGSSFDNLNKRSNDFYEKVMTNFDSDKNFFACILQKSYIERDVLVIPIEFGKTHLQRMVGRNVTLFVDKDRTWNVDLKLISNKQFTLSGGWSKFRAHYNLKIGDVCVFLLNKCKETVSFQVVIFSLEKDMNTSYFEGYCEEM 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03724 160 ProSiteProfiles B3 DNA-binding domain profile. 47 145 IPR003340 GO:0003677
Trre16g03724 160 Pfam B3 DNA binding domain 47 140 IPR003340 GO:0003677
Trre16g03724 160 SUPERFAMILY DNA-binding pseudobarrel domain 41 143 IPR015300 -
Trre16g03724 160 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 38 147 IPR044837 -
Trre16g03724 160 SMART B3_2 47 145 IPR003340 GO:0003677
Trre16g03724 160 CDD B3_DNA 33 143 IPR003340 GO:0003677
Trre16g03724 160 Gene3D - 26 146 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03724 Trre-Chr16 41783547 41784953 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03724 43 149 REM Transcription Factor Family AT4G31690 28.037 4.87e-08 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre16g03724 B3 2.8e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03724 - - tpra:123894507 199.134