Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre16g03723 ATGGACGTGGAGATGGAAAATTCAACATTGAGTGTTACTGGTGAATCTTCTATGCCTGATTCTGATGTTCAAGATCAAAACCCTATATCTTCTGTTCAACCAACTTTGCCCCAGCCAACTCAACCTGTTATTTCACCGGTTATTACTCCTGTTGTGCCTCCTCTGGCTCCAATTCCAACGGTTCCTTCCTCTCTTGTGCGACCTCTGGCACCGCTCCCAATTCGGCCACCGGTTATTAGGCCACCGGTGACACAAAATGGCGAGGTTGGTTCTAGTGATTCTGATTCGGAAGGTGATGATGAGAACACCAGAATTAATAAGGGTACTGGGGAGTATGAAATATCAGAAGAGAGTAAATTGGCGAGGGAGCGGCAGGAGAAAGTGGTGCAAGACCTCATGATGAAGAGGCGTGGTGCTGCTCTTGCTGTTCCCACGAATGACATGGCAGTGAGGGCACGTCTTCGCCATCTTGGTGAGCCGATTACTCTCTTTGGTGAGAGGGAGATGGAGAGACGAGACAGGTTGCGGATGATTATGGCAAAGCTGGATGCTGACGGTCAGCTGGAAAAGCTAATGAAAGCTCTTGAGGATGAAGAGGCCGCAACTTCTGCTCCAAAAGATGAGACCGAGGATGATCATGAGTATCCTTTTTACACTGAAGGGTCAAAGTCCCTCCTCGATGCAAGGATTGATATTGCTAAATATTCTTTAGTAAGGGCTGCAGTGCGTATTGAACGTGCCCAAAGAAGAAGAGATGATCCGGATGAAGATGTGGATGCAGAGATGGATTGGACATTGAAGCAAGCAGCGAATTTGAATCTTGAATTCAGTGAAATCGGAGATGACCGGCCACTTACTGGTTGCTCCTTCTCCCGGGATGGAAAACAGATTGCTACCTGCTCTCTAACTGGAGCTTCAAAGTTGTGGAGCATGCCTAATGTAAAAAAAGTTTCTACCTTCAAGGGGCACACCGAGCGTGCTACTGATGTTGCTTATTCTCCTTTGCACAATCATTTAGCAACTGCCTCTGCTGACAGGACAGCAAAGTACTGGAATGATCAAGGATCTCTTTTGAGAACATTTGAGGGTCATCTTGATCGTCTTGCACGCATTGCCTTCCATCCATCAGGGAAGTACTTGGGAACTGCTAGCTTTGACAAGACATGGAGATTATGGGACGTTGAAAGAGGAGAGGAGTTGCTTCTTCAAGAAGGCCATAGTAGAAGTGTATATGGTTTGGCTTTTCATCATGATGGATCGTTAGCTGCGTCTTGTGGAATGGATGCTCTGGCTCGTGTATGGGACCTTCGTACTGGGAAAAGTGTTCTTGCACTAGAGGGTCATGTCAAAACGATTTATGGCATCAGTTTTTCTCCTAATGGATATCATTTAGCCACTGGTGGTGAAGATAACACTTGTCGCATTTGGGACATGCGTAAAAAGAAATCCTTGTACACCATTCCCGCTCACTCTAATTTAATATCACAAGTCAAATTTGAGCCACAGGAGGGTTACTTTTTGGTAACTGCCTCATATGACATGACAGCCAAGATTTGGTCAGGCCGGGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAAATAAAGTTACTTCTCTGGATGTTCTTGGAGATGGCGGGTATATTCTTACTGTCTCCCACGATCGCACCATAAAGCTGTGGTCCAGCAGCACTACTAATGAGCATGCTATGGATGTTGACTAA 1725 0.4597 MDVEMENSTLSVTGESSMPDSDVQDQNPISSVQPTLPQPTQPVISPVITPVVPPLAPIPTVPSSLVRPLAPLPIRPPVIRPPVTQNGEVGSSDSDSEGDDENTRINKGTGEYEISEESKLARERQEKVVQDLMMKRRGAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDADGQLEKLMKALEDEEAATSAPKDETEDDHEYPFYTEGSKSLLDARIDIAKYSLVRAAVRIERAQRRRDDPDEDVDAEMDWTLKQAANLNLEFSEIGDDRPLTGCSFSRDGKQIATCSLTGASKLWSMPNVKKVSTFKGHTERATDVAYSPLHNHLATASADRTAKYWNDQGSLLRTFEGHLDRLARIAFHPSGKYLGTASFDKTWRLWDVERGEELLLQEGHSRSVYGLAFHHDGSLAASCGMDALARVWDLRTGKSVLALEGHVKTIYGISFSPNGYHLATGGEDNTCRIWDMRKKKSLYTIPAHSNLISQVKFEPQEGYFLVTASYDMTAKIWSGRDFKPVKTLSGHENKVTSLDVLGDGGYILTVSHDRTIKLWSSSTTNEHAMDVD 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre16g03723 574 SMART pr04_2 145 198 IPR014906 -
Trre16g03723 574 SUPERFAMILY PRP4-like 128 183 IPR036285 -
Trre16g03723 574 ProSitePatterns Trp-Asp (WD) repeats signature. 464 478 IPR019775 -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 352 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 404 435 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 355 393 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 483 520 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 316 352 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 525 562 IPR001680 GO:0005515
Trre16g03723 574 Pfam WD domain, G-beta repeat 441 477 IPR001680 GO:0005515
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 571 IPR001680 GO:0005515
Trre16g03723 574 Gene3D - 354 482 IPR015943 GO:0005515
Trre16g03723 574 Gene3D - 118 189 IPR036285 -
Trre16g03723 574 MobiDBLite consensus disorder prediction 1 38 - -
Trre16g03723 574 Pfam pre-mRNA processing factor 4 (PRP4) like 150 176 IPR014906 -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 530 562 - -
Trre16g03723 574 Coils Coil 181 201 - -
Trre16g03723 574 Gene3D - 483 571 IPR015943 GO:0005515
Trre16g03723 574 MobiDBLite consensus disorder prediction 97 119 - -
Trre16g03723 574 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 260 444 - -
Trre16g03723 574 SUPERFAMILY WD40 repeat-like 272 561 IPR036322 GO:0005515
Trre16g03723 574 MobiDBLite consensus disorder prediction 1 47 - -
Trre16g03723 574 FunFam U4/U6 small nuclear ribonucleoprotein Prp4 488 564 - -
Trre16g03723 574 Gene3D - 279 353 IPR015943 GO:0005515
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 403 444 IPR001680 GO:0005515
Trre16g03723 574 MobiDBLite consensus disorder prediction 73 119 - -
Trre16g03723 574 CDD WD40 284 562 - -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 445 486 IPR001680 GO:0005515
Trre16g03723 574 MobiDBLite consensus disorder prediction 197 216 - -
Trre16g03723 574 ProSitePatterns Trp-Asp (WD) repeats signature. 422 436 IPR019775 -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 445 479 - -
Trre16g03723 574 PRINTS G protein beta WD-40 repeat signature 380 394 IPR020472 -
Trre16g03723 574 PRINTS G protein beta WD-40 repeat signature 464 478 IPR020472 -
Trre16g03723 574 PRINTS G protein beta WD-40 repeat signature 339 353 IPR020472 -
Trre16g03723 574 PANTHER WD40 REPEAT PROTEIN 96 563 - -
Trre16g03723 574 ProSitePatterns Trp-Asp (WD) repeats signature. 380 394 IPR019775 -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 487 520 - -
Trre16g03723 574 SMART WD40_4 438 477 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 271 310 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 523 562 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 396 435 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 480 520 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 313 352 IPR001680 GO:0005515
Trre16g03723 574 SMART WD40_4 354 393 IPR001680 GO:0005515
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 487 529 IPR001680 GO:0005515
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 402 IPR001680 GO:0005515
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 352 - -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 361 398 - -
Trre16g03723 574 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 403 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre16g03723 Trre-Chr16 41769515 41772517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre16g03723 365 561 U-box Gene Family AT2G33340 22.172 4.45e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre16g03723 K12662 - gmx:100788948 907.901